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NC_048797.1__YP_009850172.1__HWC53_gp078__00227

Bact-Vir

NC_048797.1__YP_009850172.1__HWC53_gp078__00227

Identity

Accession:
NC_048797 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Goettingenvirus› Bacillus_phage_vB_BmeM-Goe8

TaxID: 2593638

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-83
PDB
Domain cluster: rep: OP534061.1__UYE92576.1__H1_156__00156__D4-57
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ga8A00 3.10.20.860 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.72 58.0 5.94e-01 91.3% 95.5%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.69 53.0 3.87e-01 84.1% 83.2%
4ua3A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 41.0 3.13e-01 79.7% 68.3%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 38.0 3.83e-01 79.7% 67.6%
1z2aA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 42.0 3.15e-01 78.3% 84.8%
4g1iA03 3.30.70.1770 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 36.0 3.65e-01 79.7% 66.7%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 37.0 3.66e-01 81.2% 67.6%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 28.0 3.39e-01 78.3% 76.9%
3cxbA02 3.30.390.70 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Salmonella typhimurium protein 0.53 37.0 3.26e-01 73.9% 93.4%
2qzbA00 2.60.460.10 Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain 0.51 33.0 2.68e-01 76.8% 31.7%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 38.0 3.06e-01 78.3% 94.1%
2xvoB00 2.60.120.1670 Mainly Beta › Sandwich › Jelly Rolls › 0.51 36.0 2.76e-01 76.8% 44.8%
3i9sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 37.0 2.93e-01 81.2% 93.8%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.50 39.0 3.42e-01 84.1% 85.6%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4992532 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.90 74.0 7.92e-01 88.4% 98.3%
4947479 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.88 62.0 7.12e-01 78.3% 100.0%
4968450 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.85 62.0 6.86e-01 84.1% 96.4%
5061538 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.85 64.0 7.04e-01 87.0% 100.0%
5031242 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.82 66.0 7.04e-01 88.4% 100.0%
4661366 375.1.1.271 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › YokU 0.81 72.0 7.07e-01 100.0% 97.3%
5081200 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 60.0 6.40e-01 89.9% 96.7%
5031701 375.1.1.55 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MqsA_antitoxin 0.73 59.0 6.11e-01 91.3% 98.5%
380878 375.1.1.55 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MqsA_antitoxin 0.71 58.0 5.83e-01 91.3% 91.4%
4929236 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.62 43.0 4.36e-01 76.8% 72.9%
4524698 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.59 40.0 4.17e-01 89.9% 76.9%
None — 0.58 41.0 2.70e-01 75.4% 96.1%
4982570 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.58 40.0 4.05e-01 89.9% 72.9%
4955882 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.57 40.0 3.35e-01 75.4% 40.8%
4991381 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 42.0 3.52e-01 78.3% 47.1%
4541164 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.56 42.0 2.95e-01 79.7% 33.2%
5050213 192.2.1.87 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ATP-synt_D 0.55 42.0 3.06e-01 81.2% 37.9%
4942551 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.55 41.0 2.87e-01 79.7% 75.5%
4386718 212.1.1.17 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › EFG_IV 0.54 41.0 3.34e-01 81.2% 56.9%
3235619 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 37.0 2.48e-01 73.9% 18.4%
3249604 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.54 41.0 2.95e-01 84.1% 61.8%
4376968 865.1.1.1 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4 0.53 40.0 3.06e-01 84.1% 73.3%
3924166 7579.1.1.1 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase 0.53 41.0 2.42e-01 82.6% 76.8%
3246318 219.1.1.16 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.53 36.0 2.51e-01 72.5% 46.6%
4020096 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.51 42.0 3.32e-01 88.4% 99.3%
3800723 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.51 39.0 2.70e-01 81.2% 46.9%
3584227 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.51 38.0 2.98e-01 79.7% 56.6%
5064206 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.50 39.0 2.71e-01 87.0% 44.6%
4171356 2495.1.1.0 ↗ a/b three-layered sandwiches › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain 0.50 35.0 3.07e-01 73.9% 48.2%
4010072 2484.1.1.86 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease 0.50 38.0 2.68e-01 82.6% 95.4%