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NC_048800.1__YP_009850650.1__HWC56_gp098__00098

Bact-Vir

NC_048800.1__YP_009850650.1__HWC56_gp098__00098

Identity

Accession:
NC_048800 ↗
Kingdom:
phage

Quality

79.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lindbergviridae› Myosmarvirus› Serratia_phage_MyoSmar

TaxID: 2596673

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-74
PDB
Domain cluster: rep: SRR1747022_scaffold_36_prodigal-single.1__X__X__00131__D11-62
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.69 62.0 5.63e-01 98.4% 89.2%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 5.82e-01 96.8% 96.6%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 52.0 5.21e-01 100.0% 84.4%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 58.0 5.49e-01 100.0% 93.5%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.65 54.0 5.27e-01 90.5% 100.0%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 58.0 4.72e-01 100.0% 70.6%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 56.0 5.41e-01 96.8% 95.8%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.64 57.0 3.93e-01 100.0% 39.7%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 4.82e-01 93.7% 68.7%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 57.0 5.50e-01 98.4% 97.2%
3jscA00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 4.50e-01 88.9% 78.1%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 55.0 5.33e-01 95.2% 95.7%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.63 55.0 4.19e-01 98.4% 57.6%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 52.0 5.35e-01 93.7% 100.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 53.0 5.25e-01 98.4% 97.0%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.61 49.0 3.45e-01 90.5% 50.0%
2a7yA00 2.30.30.440 Mainly Beta › Roll › SH3 type barrels. › Domain of unknown function DUF1918 0.58 48.0 4.48e-01 98.4% 73.8%
2h8lA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 42.0 3.57e-01 81.0% 86.7%
4fdyA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.57 50.0 3.93e-01 100.0% 47.0%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 45.0 3.98e-01 93.7% 88.5%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 44.0 3.90e-01 92.1% 89.2%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 50.0 3.03e-01 100.0% 17.1%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 46.0 3.45e-01 100.0% 87.0%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.60e-01 88.9% 67.8%
3bn0A00 3.30.1320.10 Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 0.55 35.0 3.06e-01 74.6% 42.1%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.54 46.0 4.23e-01 98.4% 98.8%
4ffkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.52 32.0 2.63e-01 88.9% 29.3%
6xmpA01 2.70.150.10 Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A 0.51 41.0 3.31e-01 100.0% 44.4%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 40.0 3.58e-01 90.5% 92.6%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3827886 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.69 61.0 5.63e-01 98.4% 95.0%
3356605 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 58.0 5.12e-01 93.7% 86.7%
5038340 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.68 59.0 5.59e-01 96.8% 88.0%
3584571 4.1.1.56 ↗ beta barrels › SH3 › SH3 › SH3 › RBB1NT 0.67 59.0 3.94e-01 96.8% 31.5%
3448215 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.66 58.0 5.53e-01 98.4% 96.0%
3893808 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.66 58.0 3.64e-01 96.8% 55.6%
3826751 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 56.0 5.20e-01 93.7% 81.2%
3928411 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 44.0 4.13e-01 74.6% 57.3%
3682210 4.25.1.1 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › Auxin_resp 0.66 57.0 5.52e-01 96.8% 100.0%
3600139 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 56.0 4.71e-01 96.8% 69.1%
3940730 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 58.0 5.05e-01 100.0% 66.3%
3720772 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 58.0 5.60e-01 98.4% 94.3%
3595169 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.19e-01 90.5% 94.3%
4012002 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 58.0 5.59e-01 98.4% 95.7%
3416068 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.64 58.0 4.30e-01 100.0% 71.6%
3484700 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.64 55.0 4.67e-01 93.7% 64.0%
3505711 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.64 58.0 5.20e-01 100.0% 83.5%
3290347 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 4.56e-01 90.5% 78.6%
3481770 4.1.1.220 ↗ beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.64 56.0 5.20e-01 98.4% 81.2%
3796759 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.64 56.0 4.91e-01 100.0% 73.7%
3623159 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.63 56.0 4.59e-01 100.0% 70.4%
3929260 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 48.0 5.04e-01 88.9% 94.5%
3738641 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.63 55.0 5.23e-01 100.0% 81.3%
3563220 4.1.1.220 ↗ beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.63 56.0 5.19e-01 100.0% 81.2%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.62 56.0 5.28e-01 100.0% 82.7%
3812766 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 52.0 5.07e-01 93.7% 95.7%
4295399 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.61 54.0 4.64e-01 100.0% 93.0%
3817488 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.61 52.0 4.41e-01 95.2% 70.5%
3520311 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.61 51.0 4.28e-01 96.8% 59.1%
3761318 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.61 54.0 5.26e-01 100.0% 97.1%
3806777 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 53.0 5.04e-01 98.4% 93.3%
3700528 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 47.0 3.84e-01 88.9% 68.8%
3433053 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.87e-01 100.0% 80.0%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.59 50.0 4.53e-01 98.4% 78.9%
3224512 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 52.0 4.42e-01 100.0% 84.5%
495 4.1.1.63 ↗ beta barrels › SH3 › SH3 › SH3 › DUF1918 0.58 48.0 4.48e-01 98.4% 73.8%
4132516 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.58 51.0 4.74e-01 98.4% 80.0%
3231925 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 50.0 4.35e-01 100.0% 85.0%
3967745 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 51.0 4.82e-01 100.0% 94.7%
3596642 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 49.0 4.51e-01 100.0% 87.1%
4959074 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 49.0 3.98e-01 100.0% 95.8%
4008273 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 46.0 4.50e-01 100.0% 91.4%
4409019 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 37.0 3.54e-01 76.2% 77.5%
3240083 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 3.13e-01 90.5% 70.9%
4440689 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 36.0 3.64e-01 76.2% 75.4%
3435335 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.51 39.0 2.59e-01 88.9% 79.1%