←Back to structures

NC_048804.1__YP_009851087.1__HWC60_gp030__00030

Bact-Vir

NC_048804.1__YP_009851087.1__HWC60_gp030__00030

Identity

Accession:
NC_048804 ↗
Kingdom:
phage

Quality

84.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Menderavirus› Stenotrophomonas_phage_Mendera

TaxID: 2650877

Cluster

View cluster (115 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 44-182
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF22769.2 best DCD 29.9 8.20e-07 88.5% 55.8%
PF00692.25 dUTPase 58.8 6.80e-16 63.3% 62.8%
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sixA00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.96 76.0 7.33e-01 100.0% 73.9%
1dunA00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.94 69.0 7.40e-01 100.0% 86.7%
5y5qC00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.91 73.0 7.28e-01 100.0% 80.7%
3ecyA00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.91 66.0 7.16e-01 100.0% 86.6%
2d4lA01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.91 67.0 7.75e-01 99.3% 99.1%
1euwA00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.91 76.0 7.69e-01 100.0% 87.5%
4ao5B01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.90 70.0 7.69e-01 100.0% 95.7%
3h6xB00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.88 75.0 7.75e-01 100.0% 93.1%
2bsyA02 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.85 61.0 7.03e-01 100.0% 99.0%
2yzjA01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.84 73.0 7.36e-01 100.0% 90.0%
4xjcF00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.81 71.0 6.59e-01 100.0% 75.7%
6lj3A01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.80 67.0 6.64e-01 100.0% 84.5%
2bsyA01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.79 57.0 5.65e-01 100.0% 70.1%
3t64A01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.78 69.0 6.92e-01 100.0% 91.3%
3km3B00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.76 72.0 6.88e-01 100.0% 88.5%
1xs1A00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.76 72.0 6.32e-01 100.0% 75.1%
3zf0A00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.76 70.0 6.84e-01 100.0% 88.6%
2r9qA02 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.75 71.0 6.67e-01 100.0% 87.1%
2r9qC01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.74 70.0 6.61e-01 100.0% 88.3%
1pkhB00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.74 69.0 6.37e-01 100.0% 86.3%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 34.0 4.23e-01 91.4% 88.6%
3gm8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 39.0 4.35e-01 100.0% 85.7%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 40.0 4.55e-01 90.6% 97.1%
2id4A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 42.0 4.23e-01 96.4% 76.8%
4wqmA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 38.0 4.31e-01 87.8% 94.9%
4b7lA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 35.0 4.00e-01 99.3% 85.0%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 42.0 4.11e-01 98.6% 71.2%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.55 37.0 3.97e-01 95.7% 83.2%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 30.0 3.47e-01 92.8% 78.1%
2zxqA04 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 45.0 4.38e-01 96.4% 98.7%
2ciqA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 43.0 3.48e-01 93.5% 96.9%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.51 43.0 4.37e-01 100.0% 93.5%
3qnfC01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.51 37.0 3.31e-01 77.0% 89.8%
4w8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 44.0 4.32e-01 98.6% 96.2%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4599976 70.2.1.0 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.97 78.0 7.81e-01 100.0% 81.4%
4656379 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.95 74.0 7.53e-01 100.0% 81.5%
4876557 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.95 75.0 7.57e-01 100.0% 80.7%
4014287 70.2.1.0 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.95 73.0 7.50e-01 100.0% 82.1%
3625168 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.94 73.0 8.07e-01 100.0% 95.7%
2709093 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.94 73.0 7.10e-01 100.0% 73.3%
27204 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.94 75.0 7.68e-01 100.0% 84.3%
2793462 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.94 73.0 7.66e-01 100.0% 86.6%
4162544 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.94 73.0 7.06e-01 100.0% 73.3%
4147159 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.94 77.0 8.17e-01 100.0% 93.6%
27230 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.94 69.0 7.43e-01 100.0% 87.4%
4862744 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.93 77.0 7.89e-01 100.0% 88.6%
4130984 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.92 77.0 7.43e-01 100.0% 77.9%
4664979 70.2.1.0 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.91 76.0 7.94e-01 100.0% 91.5%
2534305 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.90 75.0 7.37e-01 100.0% 80.4%
4995632 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.90 73.0 7.30e-01 100.0% 82.1%
224649 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.90 71.0 7.04e-01 100.0% 78.3%
4059745 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.90 80.0 8.20e-01 100.0% 94.8%
2140470 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.89 72.0 6.63e-01 100.0% 67.8%
5049748 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.88 81.0 7.75e-01 100.0% 84.5%
4966568 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.88 64.0 6.41e-01 100.0% 73.6%
3590216 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.86 75.0 7.25e-01 100.0% 82.7%
4080854 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.86 69.0 6.77e-01 100.0% 78.0%
5062200 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.86 68.0 6.42e-01 100.0% 70.1%
5032029 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.85 63.0 5.97e-01 100.0% 65.6%
5035269 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.85 63.0 5.86e-01 100.0% 63.6%
5025621 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.85 66.0 6.31e-01 100.0% 70.6%
999206 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.84 73.0 6.98e-01 100.0% 79.7%
4967931 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.80 70.0 6.63e-01 100.0% 79.4%
367299 70.2.1.0 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.80 56.0 6.25e-01 100.0% 89.3%
2709083 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.80 67.0 6.24e-01 100.0% 73.2%
1170967 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.79 67.0 6.56e-01 100.0% 81.9%
None — 0.79 71.0 6.49e-01 100.0% 74.9%
4937229 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.79 74.0 6.54e-01 100.0% 74.4%
5042019 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.78 71.0 6.64e-01 100.0% 80.0%
5056309 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.78 69.0 6.54e-01 100.0% 80.0%
5054511 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.78 70.0 6.45e-01 100.0% 75.4%
4984664 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.78 70.0 6.39e-01 100.0% 73.9%
None — 0.78 72.0 6.34e-01 100.0% 69.7%
4269280 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.78 72.0 6.55e-01 100.0% 77.1%
None — 0.77 73.0 6.45e-01 100.0% 73.6%
3960338 70.2.1.0 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.77 72.0 6.40e-01 100.0% 72.1%
4629365 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.77 72.0 6.29e-01 100.0% 68.8%
3256286 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.77 72.0 6.65e-01 100.0% 80.5%
None — 0.76 72.0 6.33e-01 100.0% 74.9%
5073212 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.76 72.0 6.75e-01 100.0% 84.2%
5031214 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.76 72.0 6.39e-01 100.0% 74.7%
5002855 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.76 70.0 6.46e-01 100.0% 78.0%
4052918 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.76 72.0 6.33e-01 100.0% 74.4%
4993749 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.76 71.0 6.39e-01 100.0% 75.6%
5022441 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.76 68.0 6.56e-01 100.0% 85.1%
4032891 70.2.1.1 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase 0.76 74.0 6.69e-01 100.0% 84.0%
5064841 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.76 71.0 6.27e-01 100.0% 73.3%
None — 0.76 72.0 6.36e-01 100.0% 76.3%
4136503 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.75 72.0 6.34e-01 100.0% 76.8%
4075672 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.75 71.0 6.32e-01 100.0% 76.3%
3271362 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.75 71.0 6.19e-01 100.0% 70.0%
5067824 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.75 70.0 6.10e-01 100.0% 75.1%
4947773 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.75 71.0 6.65e-01 100.0% 84.8%
None — 0.75 71.0 6.40e-01 100.0% 77.8%
1247251 70.2.1.3 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD_N 0.74 70.0 6.57e-01 100.0% 87.3%
5068130 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.74 69.0 6.34e-01 100.0% 78.3%
4989218 70.2.1.0 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like 0.74 69.0 6.79e-01 99.3% 93.8%
5043784 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.73 69.0 5.98e-01 100.0% 75.0%
5057948 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 41.0 4.52e-01 100.0% 80.9%
5039968 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 42.0 4.39e-01 100.0% 73.6%
3479342 11.1.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.63 36.0 4.15e-01 100.0% 77.0%
3627438 11.1.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.60 35.0 4.09e-01 92.8% 85.6%
4011239 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 34.0 4.25e-01 88.5% 97.5%
5001686 11.1.1.80 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAP_beta 0.58 38.0 4.23e-01 100.0% 87.6%
4080130 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 32.0 4.02e-01 84.2% 97.3%
3904189 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 34.0 3.85e-01 87.8% 79.0%
3268048 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 27.0 3.76e-01 83.5% 100.0%
4122119 11.1.1.335 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgB_N 0.54 31.0 3.55e-01 98.6% 77.9%
3709716 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 40.0 4.35e-01 100.0% 96.5%
3494490 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 4.17e-01 100.0% 80.7%
4615128 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 43.0 4.25e-01 95.0% 100.0%