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NC_048804.1__YP_009851176.1__HWC60_gp273__00119

Bact-Vir

NC_048804.1__YP_009851176.1__HWC60_gp273__00119

Identity

Accession:
NC_048804 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-63
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5bukB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.79 53.0 3.14e-01 100.0% 9.6%
3c4aA02 3.30.9.20 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.71 49.0 3.60e-01 100.0% 28.4%
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 48.0 4.66e-01 100.0% 63.6%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 64.0 5.06e-01 100.0% 57.1%
3udfA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.68 60.0 3.64e-01 100.0% 66.6%
3li9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.67 60.0 4.68e-01 100.0% 66.9%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.67 60.0 4.48e-01 100.0% 75.0%
4axhA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.67 53.0 4.01e-01 100.0% 38.3%
2bg1A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.66 58.0 3.66e-01 100.0% 76.6%
2cfuA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.66 52.0 3.98e-01 100.0% 38.0%
3fwlA02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.66 58.0 3.48e-01 100.0% 63.0%
6mw4A01 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.65 58.0 4.46e-01 100.0% 53.8%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.64 58.0 4.67e-01 100.0% 67.0%
3frnA01 3.10.129.70 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.64 44.0 3.28e-01 100.0% 29.5%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.63 56.0 4.29e-01 100.0% 43.7%
2oayA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.62 54.0 3.88e-01 100.0% 75.6%
1vwxr00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.62 42.0 3.33e-01 70.7% 55.2%
4nurA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.62 50.0 3.79e-01 100.0% 38.2%
7z0sE02 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.61 53.0 3.37e-01 100.0% 88.6%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 45.0 3.21e-01 77.6% 56.1%
5ctnA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 52.0 3.50e-01 100.0% 83.3%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.60 52.0 3.98e-01 100.0% 49.3%
5hsqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 53.0 4.09e-01 100.0% 62.8%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.60 48.0 3.24e-01 89.7% 78.4%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.59 41.0 2.55e-01 72.4% 55.8%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.59 43.0 4.53e-01 84.5% 94.0%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 52.0 3.95e-01 100.0% 73.9%
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.58 53.0 4.17e-01 100.0% 54.3%
1914A00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.58 53.0 3.67e-01 100.0% 33.3%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 52.0 4.45e-01 100.0% 94.6%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 30.0 2.82e-01 86.2% 37.0%
5akpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 51.0 3.94e-01 100.0% 70.5%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.57 48.0 3.98e-01 98.3% 58.9%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.57 50.0 4.34e-01 100.0% 77.8%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.56 50.0 4.80e-01 100.0% 94.0%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.55 46.0 4.22e-01 98.3% 70.3%
3v7iA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 48.0 3.60e-01 100.0% 95.2%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.52 48.0 3.89e-01 100.0% 76.0%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.52 38.0 2.94e-01 79.3% 48.6%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.52 37.0 3.03e-01 82.8% 48.9%
3h0gH00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 39.0 3.15e-01 84.5% 98.4%
8h68A01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.51 41.0 2.82e-01 89.7% 67.3%
3fgqA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 44.0 3.19e-01 100.0% 87.4%
3lnnA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.51 42.0 3.73e-01 96.6% 70.3%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 47.0 3.55e-01 100.0% 90.6%
2bkkA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 39.0 3.43e-01 98.3% 55.6%
1lj5A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 40.0 3.01e-01 89.7% 78.6%
3by9B01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 40.0 3.29e-01 100.0% 73.3%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3514856 1181.1.1.0 0.81 57.0 5.19e-01 100.0% 57.3%
3212404 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.70 61.0 3.91e-01 100.0% 21.6%
3242741 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.70 62.0 3.99e-01 100.0% 21.7%
3512817 304.107.1.10 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf 0.70 62.0 4.83e-01 100.0% 79.2%
3623922 331.10.2.6 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › BBS7_pf 0.69 60.0 5.32e-01 100.0% 74.1%
3484746 304.107.1.10 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf 0.68 61.0 4.91e-01 100.0% 71.8%
3222725 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.68 60.0 3.74e-01 98.3% 18.7%
3701279 304.107.1.10 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf 0.67 60.0 5.11e-01 100.0% 65.3%
3879684 223.2.1.46 a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, FNIP_M 0.67 61.0 4.34e-01 100.0% 46.7%
3220784 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.67 58.0 3.78e-01 100.0% 22.5%
3242542 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.67 56.0 3.66e-01 98.3% 21.2%
4000117 5.1.4.224 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.67 58.0 3.64e-01 100.0% 100.0%
4008460 223.3.1.18 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › PF30382 0.67 59.0 3.58e-01 100.0% 57.6%
3573602 223.3.1.15 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase, PF30382, PF30384 0.67 59.0 3.51e-01 100.0% 56.2%
3800961 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 60.0 3.51e-01 100.0% 94.1%
3227253 331.9.1.8 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP3B1_C_2 0.67 58.0 4.89e-01 100.0% 58.9%
4992460 222.1.1.43 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › DUF2103 0.66 48.0 4.19e-01 100.0% 51.1%
3616431 5.1.4.103 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DCAF17 0.66 60.0 3.47e-01 100.0% 89.3%
3705320 223.2.1.42 a+b three layers › Profilin-like › profilin-like › profilin-like › Synaptobrevin 0.66 61.0 4.30e-01 100.0% 42.5%
5066585 881.2.1.0 a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like 0.65 58.0 4.45e-01 100.0% 47.7%
4505397 5087.1.1.0 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 0.65 46.0 3.09e-01 100.0% 18.8%
3839832 3799.1.1.1 alpha bundles › SabA N-terminal extracellular adhesion domain › SabA N-terminal extracellular adhesion domain › SabA N-terminal extracellular adhesion domain › SabA_adhesion 0.65 57.0 3.34e-01 100.0% 13.3%
5016545 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.65 57.0 4.15e-01 100.0% 62.7%
3461881 223.2.1.15 a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.64 59.0 4.53e-01 100.0% 59.2%
3344476 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.64 57.0 4.34e-01 100.0% 59.3%
3742968 223.5.1.0 a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like 0.64 60.0 5.45e-01 100.0% 81.3%
3586461 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 48.0 3.14e-01 100.0% 17.1%
3244742 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.63 56.0 3.56e-01 100.0% 24.1%
4953129 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.63 57.0 4.50e-01 100.0% 50.4%
4177374 223.3.1.14 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase, PF29195 0.63 55.0 3.43e-01 100.0% 54.3%
4945712 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 57.0 4.37e-01 100.0% 57.6%
3238811 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 56.0 3.48e-01 100.0% 23.5%
3973805 223.3.1.3 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.62 54.0 3.46e-01 100.0% 48.5%
5008246 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 57.0 4.85e-01 100.0% 67.8%
3683398 3100.1.1.0 extended segments › Synaptobrevin › Synaptobrevin › Synaptobrevin 0.62 56.0 3.92e-01 100.0% 38.3%
4946228 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 56.0 4.26e-01 100.0% 53.8%
2605257 3521.1.1.0 a+b three layers › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain 0.62 43.0 3.47e-01 74.1% 39.3%
4964148 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 55.0 4.31e-01 100.0% 72.5%
3390111 223.2.1.16 a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.61 55.0 4.71e-01 100.0% 77.8%
3232235 390.1.1.7 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 0.61 51.0 4.21e-01 98.3% 53.9%
3392216 223.2.1.31 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 0.61 55.0 3.78e-01 100.0% 41.6%
4004064 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.61 53.0 4.07e-01 100.0% 53.3%
3705153 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 56.0 4.15e-01 100.0% 60.0%
3332764 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.60 54.0 4.74e-01 100.0% 72.9%
3768231 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.60 48.0 3.12e-01 89.7% 81.0%
4930594 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.60 52.0 4.77e-01 98.3% 81.3%
3224717 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.60 53.0 4.17e-01 100.0% 68.3%
4945232 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 53.0 4.17e-01 100.0% 63.3%
3960286 331.1.1.3 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AlkA_N 0.59 52.0 4.62e-01 100.0% 75.3%
4938263 220.5.1.1 beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.59 54.0 4.13e-01 100.0% 60.8%
3494170 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.58 46.0 3.16e-01 89.7% 74.5%
3217385 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 49.0 4.37e-01 98.3% 83.5%
3955040 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.57 49.0 3.16e-01 98.3% 43.3%
3495848 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.56 45.0 2.69e-01 91.4% 84.7%
3176053 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 50.0 3.86e-01 100.0% 67.7%
3515884 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 51.0 3.91e-01 100.0% 69.2%
3927128 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 49.0 3.84e-01 100.0% 66.7%
4955450 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.54 46.0 3.61e-01 96.6% 61.6%
3889197 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.53 39.0 2.97e-01 84.5% 35.3%
3743299 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.53 42.0 3.40e-01 91.4% 45.5%
3700961 2.1.1.27 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rpb8 0.52 48.0 3.47e-01 100.0% 59.1%
3914585 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 47.0 3.84e-01 100.0% 71.4%
3564088 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 47.0 3.76e-01 100.0% 74.5%
3544563 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 47.0 3.82e-01 100.0% 71.4%
3907293 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 47.0 3.82e-01 100.0% 71.4%
3481360 12.5.1.0 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.51 35.0 2.69e-01 74.1% 64.5%