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NC_048805.1__YP_009851379.1__HWC61_gp36__00036

Bact-Vir

NC_048805.1__YP_009851379.1__HWC61_gp36__00036

Identity

Accession:
NC_048805 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-51
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.81 67.0 4.97e-01 92.0% 39.8%
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.80 65.0 5.36e-01 100.0% 51.1%
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.73 57.0 4.72e-01 92.0% 46.8%
2xzm500 3.30.1740.20 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Ribosomal protein S26 0.71 53.0 4.31e-01 82.0% 76.5%
2zetC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.70 55.0 4.07e-01 94.0% 31.9%
5xfoA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.68 45.0 4.39e-01 74.0% 62.5%
1pjqA02 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.68 34.0 3.92e-01 100.0% 55.6%
1xa6A02 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.68 55.0 4.93e-01 90.0% 65.2%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.67 51.0 4.80e-01 84.0% 67.7%
2kq8A01 4.10.80.110 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › 0.66 35.0 3.77e-01 72.0% 91.3%
1mhyD00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.66 50.0 2.85e-01 82.0% 9.0%
1y8fA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.66 52.0 5.18e-01 90.0% 86.3%
2incA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.64 47.0 2.72e-01 80.0% 9.6%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.63 37.0 3.71e-01 88.0% 54.0%
6nifA01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.62 47.0 3.19e-01 84.0% 22.5%
2innB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.62 45.0 2.64e-01 80.0% 9.5%
1r94A00 2.60.300.12 Mainly Beta › Sandwich › Hypothetical Protein Aq_1857; Chain: A; › HesB-like domain 0.62 48.0 3.96e-01 88.0% 75.3%
4bkwA02 3.30.1360.220 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Domain of unknown function (DUF3480), N-terminal subdomain 0.61 40.0 3.16e-01 98.0% 34.0%
1go4A00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.61 45.0 3.12e-01 84.0% 25.5%
1x0gA00 2.60.300.12 Mainly Beta › Sandwich › Hypothetical Protein Aq_1857; Chain: A; › HesB-like domain 0.61 45.0 3.71e-01 84.0% 71.6%
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.60 48.0 4.69e-01 88.0% 87.0%
1k3xA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 40.0 3.05e-01 70.0% 66.9%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.59 43.0 3.36e-01 84.0% 34.5%
2xjyA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.58 47.0 4.45e-01 92.0% 96.8%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.58 47.0 4.62e-01 92.0% 87.3%
4wh5A00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.58 43.0 3.14e-01 84.0% 86.1%
2fclA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.58 44.0 3.18e-01 84.0% 84.0%
4npsA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 3.90e-01 76.0% 100.0%
3o8oF01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 47.0 3.08e-01 96.0% 34.7%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 3.48e-01 82.0% 70.5%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 36.0 3.36e-01 92.0% 47.7%
2bzlA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 43.0 2.80e-01 92.0% 35.6%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 3.25e-01 70.0% 74.4%
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.56 41.0 2.72e-01 80.0% 21.5%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.01e-01 82.0% 50.0%
5yl6A01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.55 37.0 2.65e-01 72.0% 80.7%
3upsA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 45.0 3.59e-01 94.0% 87.0%
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.54 32.0 3.32e-01 82.0% 54.3%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.27e-01 84.0% 44.4%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 45.0 3.39e-01 100.0% 49.6%
4blpB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 39.0 2.51e-01 80.0% 22.6%
2uzgA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 40.0 3.39e-01 88.0% 47.4%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 39.0 2.43e-01 82.0% 90.8%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 41.0 2.63e-01 84.0% 19.6%
3u1nB01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.52 39.0 2.42e-01 84.0% 72.3%
2kumA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 36.0 3.52e-01 98.0% 64.9%
4jpbW02 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.52 35.0 3.11e-01 72.0% 82.3%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 34.0 2.79e-01 82.0% 35.1%
1uhvA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 40.0 2.41e-01 86.0% 22.1%
2y3mA02 3.30.1370.130 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.51 33.0 3.23e-01 84.0% 60.7%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3230993 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.88 67.0 6.49e-01 90.0% 72.7%
3403532 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.84 55.0 6.31e-01 72.0% 97.1%
4336402 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.82 62.0 4.05e-01 82.0% 20.0%
3900352 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.81 66.0 5.27e-01 100.0% 47.4%
3924159 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.79 62.0 5.14e-01 92.0% 48.9%
3066048 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.79 63.0 5.22e-01 100.0% 49.5%
3679252 376.1.3.24 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › NSD_PHD 0.78 56.0 5.30e-01 76.0% 63.3%
4016556 376.1.3.31 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-4CXXC_R1 0.77 61.0 4.68e-01 86.0% 70.0%
4466003 376.1.3.44 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Siva 0.77 55.0 5.08e-01 82.0% 58.5%
3715795 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.77 67.0 5.26e-01 100.0% 46.7%
3343337 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.77 61.0 5.15e-01 92.0% 51.8%
5041606 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.76 64.0 5.91e-01 94.0% 78.5%
3252718 377.1.1.96 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF25999 0.75 53.0 5.73e-01 78.0% 92.5%
3907480 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.75 67.0 5.47e-01 100.0% 92.2%
3877617 376.1.1.37 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.74 59.0 4.91e-01 86.0% 50.6%
3566304 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.74 53.0 5.69e-01 76.0% 95.0%
3259047 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.74 61.0 5.99e-01 92.0% 85.5%
3832467 376.1.2.16 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT 0.74 59.0 5.14e-01 88.0% 61.3%
3372361 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.73 53.0 5.70e-01 82.0% 97.5%
3172042 376.1.1.19 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv 0.73 63.0 5.62e-01 96.0% 68.6%
3623406 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.73 59.0 4.87e-01 94.0% 49.5%
3846283 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.73 54.0 5.40e-01 82.0% 80.0%
3646133 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.73 52.0 5.41e-01 76.0% 86.7%
3211768 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 61.0 4.92e-01 100.0% 47.6%
3878133 375.1.1.265 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-FCS 0.71 48.0 5.18e-01 78.0% 90.0%
3732023 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 55.0 4.56e-01 92.0% 46.0%
2878975 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.69 53.0 4.65e-01 84.0% 55.3%
3705738 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.69 56.0 5.38e-01 94.0% 80.0%
5010149 377.1.1.131 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TRASH_HVO_1752_C 0.69 46.0 5.02e-01 76.0% 87.5%
4208861 2004.1.1.224 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_SecA 0.69 53.0 3.35e-01 84.0% 21.6%
5069246 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 54.0 5.50e-01 90.0% 88.0%
3731209 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.69 51.0 4.13e-01 82.0% 41.0%
5068785 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.68 46.0 4.96e-01 76.0% 87.5%
3499880 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.68 51.0 3.85e-01 82.0% 32.8%
4977157 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.67 52.0 5.47e-01 88.0% 95.6%
3938379 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.67 53.0 4.97e-01 94.0% 70.8%
5049209 101.1.2.46 alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg 0.67 33.0 2.79e-01 86.0% 28.2%
5049855 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 50.0 4.77e-01 84.0% 70.0%
4025982 389.1.1.15 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_MSP1_1 0.66 36.0 3.81e-01 74.0% 57.8%
4597621 150.1.2.3 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Phenol_Hydrox 0.66 50.0 2.86e-01 82.0% 8.8%
4013684 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.66 52.0 4.83e-01 90.0% 67.7%
5040191 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.66 50.0 4.66e-01 84.0% 67.2%
1442743 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.65 48.0 4.58e-01 82.0% 67.2%
3938801 384.1.1.0 few secondary structure elements › BPTI-like › BPTI-like › BPTI-like 0.65 48.0 4.76e-01 84.0% 98.2%
5061454 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.65 45.0 3.21e-01 72.0% 79.2%
4961224 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.65 45.0 4.12e-01 76.0% 87.1%
3907976 377.9.1.8 few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS 0.63 46.0 4.75e-01 82.0% 86.7%
3566649 377.1.1.16 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.61 48.0 5.04e-01 92.0% 97.8%
4959094 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.61 44.0 4.33e-01 86.0% 72.7%
3918443 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.61 49.0 5.09e-01 92.0% 97.8%
4022881 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.60 45.0 2.95e-01 86.0% 74.6%
4967026 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.60 46.0 4.34e-01 90.0% 95.4%
5083603 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.60 42.0 3.18e-01 78.0% 45.7%
4977549 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.59 42.0 3.87e-01 78.0% 87.1%
3964732 377.1.1.119 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ATPase-cat_bd 0.57 44.0 4.49e-01 90.0% 90.0%
3300469 377.9.1.1 few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND 0.56 40.0 4.07e-01 82.0% 82.0%
151131 316.1.1.21 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit 0.56 43.0 3.15e-01 90.0% 86.7%
5071120 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.55 37.0 3.15e-01 70.0% 75.3%
4945239 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.54 38.0 3.99e-01 76.0% 97.5%
5078154 316.2.1.0 a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like 0.53 39.0 2.95e-01 84.0% 70.0%
4176445 247.1.1.44 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, RMMBL, Lactamase_B_6 0.52 41.0 2.49e-01 86.0% 25.5%
5016606 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.01e-01 88.0% 76.4%
4057956 2004.1.1.35 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Bac_DnaA 0.52 39.0 2.53e-01 82.0% 26.5%
3244217 101.1.2.506 alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.52 37.0 2.77e-01 76.0% 97.6%
5013841 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.52 44.0 3.36e-01 100.0% 52.8%
5037669 3239.1.1.1 alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.51 44.0 2.72e-01 100.0% 97.5%
3276702 5.1.4.319 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_1st 0.51 44.0 2.52e-01 100.0% 9.9%