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NC_048807.1__YP_009851666.1__HWC63_gp209__00143

Bact-Vir

NC_048807.1__YP_009851666.1__HWC63_gp209__00143

Identity

Accession:
NC_048807 ↗
Kingdom:
phage

Quality

64.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-92
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.69 49.0 4.27e-01 75.0% 54.3%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.64 46.0 4.05e-01 78.3% 55.3%
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 45.0 3.85e-01 81.7% 43.8%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.64 47.0 4.79e-01 80.0% 81.7%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.63 54.0 3.99e-01 98.3% 61.7%
4hslA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 51.0 3.84e-01 95.0% 88.6%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.63 52.0 5.12e-01 96.7% 89.4%
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.62 54.0 4.69e-01 100.0% 72.6%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 50.0 3.78e-01 93.3% 89.6%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 41.0 3.55e-01 81.7% 42.0%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.61 51.0 3.77e-01 96.7% 52.9%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 43.0 3.78e-01 76.7% 97.9%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.60 43.0 4.33e-01 80.0% 79.4%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 41.0 3.98e-01 73.3% 97.1%
3l5iA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 51.0 4.58e-01 100.0% 79.5%
2e3vA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 50.0 4.30e-01 100.0% 68.9%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 49.0 4.24e-01 98.3% 91.0%
7y8sB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 50.0 4.52e-01 100.0% 79.3%
1wfoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 4.12e-01 100.0% 69.2%
2pjyC00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.56 40.0 3.78e-01 78.3% 65.8%
1tocR02 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.56 30.0 3.14e-01 76.7% 53.4%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.37e-01 85.0% 49.3%
4gxbA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 45.0 3.98e-01 96.7% 87.6%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 39.0 3.91e-01 78.3% 83.1%
2dbjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 3.97e-01 100.0% 67.0%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 39.0 3.35e-01 85.0% 44.7%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.55 40.0 3.06e-01 81.7% 42.1%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 47.0 3.01e-01 100.0% 39.6%
4qpwA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 47.0 3.63e-01 98.3% 94.4%
4n5uA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 3.96e-01 100.0% 69.4%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 44.0 3.83e-01 93.3% 92.0%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 46.0 3.80e-01 100.0% 89.0%
3d0jA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 47.0 3.68e-01 100.0% 50.7%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.54 40.0 3.86e-01 81.7% 73.2%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.54 42.0 3.49e-01 96.7% 93.2%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 45.0 3.27e-01 100.0% 68.1%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.54 38.0 3.57e-01 76.7% 71.4%
1fnfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 45.0 3.98e-01 100.0% 75.5%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 45.0 2.94e-01 100.0% 46.0%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.84e-01 100.0% 73.5%
1b1zA02 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 39.0 3.12e-01 81.7% 77.9%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 43.0 3.56e-01 98.3% 85.0%
4d8mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 42.0 3.20e-01 96.7% 83.5%
7bi2A02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 42.0 3.36e-01 95.0% 84.8%
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.52 41.0 3.56e-01 98.3% 75.9%
2dn7A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.64e-01 100.0% 65.4%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.50 39.0 2.52e-01 93.3% 91.6%
4hffA00 3.90.1720.70 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.50 38.0 2.95e-01 91.7% 33.5%
5xyib00 2.20.25.100 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 0.50 38.0 3.49e-01 83.3% 81.7%
3clqA04 3.90.1700.10 Alpha Beta › Alpha-Beta Complex › v583 fold › v583 domain like 0.50 39.0 2.92e-01 86.7% 98.8%
2vzsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.58e-01 100.0% 82.7%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4560889 11.1.6.5 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND 0.76 56.0 4.39e-01 78.3% 37.6%
3553310 12.5.1.18 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › UPA-FIIND 0.76 56.0 4.36e-01 78.3% 37.6%
5056500 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.76 54.0 4.84e-01 76.7% 87.1%
5028837 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.69 47.0 4.46e-01 70.0% 98.6%
4995222 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.69 49.0 4.61e-01 76.7% 98.7%
1844216 4007.1.1.1 a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg 0.69 49.0 5.26e-01 78.3% 90.2%
4944520 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.69 51.0 3.45e-01 81.7% 48.7%
3609926 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.68 57.0 4.52e-01 96.7% 63.8%
3640841 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.66 50.0 3.02e-01 81.7% 14.4%
3588192 4325.1.1.7 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 0.64 47.0 5.04e-01 80.0% 100.0%
5011497 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.64 55.0 3.88e-01 100.0% 31.0%
5014007 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.63 46.0 4.77e-01 80.0% 85.5%
3905094 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.63 52.0 4.17e-01 98.3% 77.8%
3616256 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.62 55.0 4.51e-01 100.0% 66.4%
3483062 221.1.1.116 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_6 0.61 51.0 4.14e-01 96.7% 94.2%
4026479 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.61 49.0 4.00e-01 98.3% 60.8%
3854546 11.1.1.694 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Uroplakin_II 0.60 52.0 4.14e-01 100.0% 73.6%
3212170 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.59 51.0 4.47e-01 100.0% 73.7%
5014684 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.59 43.0 4.39e-01 78.3% 81.0%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.59 43.0 4.40e-01 80.0% 80.0%
4420175 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 51.0 3.99e-01 100.0% 51.1%
3217608 284.1.2.1 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.59 42.0 3.66e-01 78.3% 97.0%
4501238 207.1.1.37 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › C-JID 0.59 50.0 3.41e-01 100.0% 48.2%
3890320 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 51.0 4.43e-01 100.0% 72.6%
3066660 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.58 50.0 4.33e-01 100.0% 70.7%
3582833 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.58 48.0 4.07e-01 96.7% 92.7%
4946228 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 43.0 3.40e-01 83.3% 36.9%
4338821 221.1.1.69 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SNX17-27-31_F1_FERM 0.58 47.0 4.06e-01 96.7% 81.0%
5029914 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.58 44.0 4.58e-01 85.0% 100.0%
3961932 323.1.1.9 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › WS_DGAT_cat,WS_DGAT_C 0.58 44.0 3.11e-01 90.0% 41.3%
3727777 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 42.0 3.42e-01 78.3% 77.4%
3283546 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 44.0 3.40e-01 85.0% 37.8%
3922974 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 49.0 3.07e-01 100.0% 30.3%
4674170 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.57 48.0 3.91e-01 96.7% 63.3%
3799496 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 42.0 3.10e-01 81.7% 31.4%
4643845 3019.1.1.0 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain 0.56 45.0 3.57e-01 93.3% 81.4%
3259125 11.1.1.31 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG2 0.56 48.0 4.00e-01 100.0% 70.0%
5031647 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 45.0 4.35e-01 95.0% 90.0%
3790339 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 48.0 4.13e-01 100.0% 74.0%
3598742 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 47.0 3.90e-01 100.0% 80.0%
3827046 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.55 41.0 3.72e-01 85.0% 73.3%
4971294 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 46.0 4.44e-01 100.0% 84.3%
3969194 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.54 40.0 3.00e-01 83.3% 36.0%
2393519 327.6.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Germane 0.54 38.0 3.04e-01 78.3% 64.2%
4964280 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 4.00e-01 95.0% 80.0%
5036972 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 4.00e-01 100.0% 63.0%
3400623 284.1.3.13 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › PF30019 0.54 42.0 4.05e-01 93.3% 82.7%
3622256 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 39.0 2.98e-01 80.0% 34.2%
3621943 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 41.0 3.33e-01 90.0% 85.4%
5068716 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.53 41.0 2.67e-01 90.0% 55.3%
3254760 220.1.1.29 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_3 0.52 35.0 2.85e-01 78.3% 34.4%
3218957 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.52 45.0 3.69e-01 100.0% 76.5%
4000176 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.52 42.0 3.62e-01 95.0% 70.5%
5049003 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.33e-01 98.3% 49.3%
4795720 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 37.0 2.58e-01 80.0% 25.2%
3990889 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.51 43.0 3.14e-01 96.7% 75.9%
4444422 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 41.0 3.29e-01 91.7% 87.8%
4252321 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 41.0 3.59e-01 100.0% 84.8%
3359658 11.1.4.77 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO_6th 0.50 39.0 3.43e-01 95.0% 55.0%