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NC_048821.1__YP_009853422.1__HWC77_gp070__00070
Bact-VirNC_048821.1__YP_009853422.1__HWC77_gp070__00070
Identity
- Accession:
- NC_048821 ↗
- Kingdom:
- phage
Quality
79.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chimalliviridae›
Aphroditevirus›
Photobacterium_phage_PDCC-1
TaxID: 2664246
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-104
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6hwjA01 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.59 | 52.0 | 3.86e-01 | 97.8% | 81.7% |
| 3mn2A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 43.0 | 4.16e-01 | 82.6% | 91.7% |
| 1oyzA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.55 | 42.0 | 3.10e-01 | 84.8% | 37.0% |
| 3mzkB03 | 1.20.58.940 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 34.0 | 3.72e-01 | 85.9% | 81.4% |
| 4uurA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 40.0 | 3.67e-01 | 80.4% | 87.9% |
| 4ivfA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 42.0 | 3.96e-01 | 87.0% | 79.3% |
| 4doyA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 38.0 | 3.13e-01 | 77.2% | 71.0% |
| 3wd6A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 42.0 | 3.92e-01 | 87.0% | 74.6% |
| 4irnA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.52 | 46.0 | 4.26e-01 | 98.9% | 92.4% |
| 8cdaB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.52 | 40.0 | 3.36e-01 | 83.7% | 86.8% |
| 1oglA01 | 1.20.1680.10 | Mainly Alpha › Up-down Bundle › all-alpha NTP pyrophosphatases › Type II deoxyuridine triphosphatase | 0.51 | 36.0 | 3.30e-01 | 72.8% | 81.4% |
| 5dvwA00 | 1.20.120.1160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.50 | 38.0 | 3.44e-01 | 84.8% | 57.6% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4453306 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.64 | 30.0 | 2.76e-01 | 76.1% | 34.2% |
| 3990438 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.60 | 41.0 | 3.96e-01 | 72.8% | 94.5% |
| 3642078 | 226.1.1.25 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BACK_BPM_SPOP | 0.59 | 41.0 | 3.58e-01 | 72.8% | 51.0% |
| 4603334 | 7011.1.1.0 ↗ | alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain | 0.59 | 49.0 | 3.49e-01 | 91.3% | 85.0% |
| 4590066 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.58 | 46.0 | 4.38e-01 | 87.0% | 93.8% |
| 3972412 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.58 | 45.0 | 4.32e-01 | 84.8% | 93.6% |
| 3537874 | 320.4.1.5 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › Gasdermin_C | 0.57 | 39.0 | 3.08e-01 | 71.7% | 50.2% |
| 3968456 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.57 | 45.0 | 4.28e-01 | 85.9% | 95.4% |
| 3981026 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.56 | 44.0 | 4.29e-01 | 84.8% | 99.0% |
| None | — | 0.56 | 43.0 | 4.24e-01 | 82.6% | 98.0% | |
| 4345163 | 633.10.1.28 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › PF27080 | 0.56 | 39.0 | 3.65e-01 | 72.8% | 85.2% |
| 4009674 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.55 | 43.0 | 4.11e-01 | 84.8% | 94.5% |
| 4010677 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.55 | 44.0 | 4.37e-01 | 88.0% | 99.0% |
| None | — | 0.54 | 43.0 | 4.22e-01 | 85.9% | 99.0% | |
| 3727689 | 2008.1.1.143 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 | 0.53 | 42.0 | 3.18e-01 | 89.1% | 60.0% |
| 5013781 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 40.0 | 3.55e-01 | 85.9% | 67.6% |
| 3435219 | 3718.1.1.27 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › DUF3755 | 0.52 | 37.0 | 3.94e-01 | 73.9% | 88.7% |
| 3231673 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.51 | 32.0 | 3.54e-01 | 94.6% | 77.3% |
| 1888148 | 3432.1.1.1 ↗ | alpha bundles › Minor nucleoprotein VP30 C-terminal domain › Minor nucleoprotein VP30 C-terminal domain › Minor nucleoprotein VP30 C-terminal domain › Transcript_VP30 | 0.51 | 38.0 | 3.43e-01 | 84.8% | 54.7% |
| 4021032 | 4954.1.1.0 ↗ | a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit | 0.51 | 36.0 | 2.91e-01 | 76.1% | 40.5% |
| 3269180 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 38.0 | 3.66e-01 | 83.7% | 74.5% |
D2
medium
residues 1-12_105-126_143-188