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NC_048821.1__YP_009853478.1__HWC77_gp126__00126

Bact-Vir

NC_048821.1__YP_009853478.1__HWC77_gp126__00126

Identity

Accession:
NC_048821 ↗
Kingdom:
phage

Quality

72.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Aphroditevirus› Photobacterium_phage_PDCC-1

TaxID: 2664246

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-93
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.60 40.0 4.27e-01 100.0% 78.4%
6wqbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 43.0 3.63e-01 96.5% 44.6%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.57 40.0 4.16e-01 97.6% 80.5%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.42e-01 100.0% 83.5%
3l4gC03 1.10.10.2330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 35.0 4.09e-01 88.2% 100.0%
4p72A04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.56 35.0 3.69e-01 75.3% 71.1%
3oopA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.72e-01 98.8% 53.0%
2i4lA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 46.0 3.19e-01 96.5% 78.8%
6swc801 3.30.30.170 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.55 39.0 3.57e-01 97.6% 55.2%
6teyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 4.38e-01 100.0% 97.3%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.54e-01 100.0% 44.6%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 3.88e-01 91.8% 78.2%
1xkpC00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 43.0 3.74e-01 84.7% 77.8%
3ezjA03 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 29.0 3.34e-01 70.6% 76.4%
4izzB03 1.10.10.1670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain 0.53 44.0 4.08e-01 96.5% 100.0%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 4.11e-01 100.0% 77.2%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 32.0 3.24e-01 95.3% 59.5%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 4.00e-01 100.0% 78.5%
2e9yB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.52 45.0 3.05e-01 95.3% 85.6%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 3.76e-01 95.3% 92.9%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 40.0 3.89e-01 100.0% 77.4%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 43.0 4.22e-01 100.0% 88.0%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 4.09e-01 94.1% 94.7%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 32.0 3.53e-01 71.8% 80.3%
6j0eB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.81e-01 100.0% 67.5%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.71e-01 91.8% 74.7%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.51 42.0 3.09e-01 91.8% 50.2%
2dy1A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.50 35.0 3.69e-01 100.0% 81.6%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.50 43.0 4.09e-01 100.0% 83.2%
2w00A02 3.90.640.50 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.50 30.0 3.24e-01 89.4% 69.9%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5010522 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 52.0 5.21e-01 100.0% 84.3%
3600582 2003.1.7.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like 0.64 46.0 3.22e-01 98.8% 22.8%
3301908 101.1.2.281 ↗ alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.59 46.0 4.53e-01 100.0% 76.8%
3273469 101.1.2.281 ↗ alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.59 46.0 4.66e-01 100.0% 86.7%
3714022 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.58 38.0 4.46e-01 90.6% 96.7%
4971296 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 4.43e-01 96.5% 83.7%
3759086 3016.1.1.21 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › PDXDC1-like_cen 0.57 42.0 3.53e-01 77.6% 85.5%
4974545 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.27e-01 100.0% 69.1%
3946321 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 4.33e-01 100.0% 95.4%
3995700 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.56 40.0 3.54e-01 74.1% 66.4%
5029842 101.1.2.645 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_40 0.56 45.0 4.26e-01 100.0% 72.4%
5001113 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 4.11e-01 98.8% 74.4%
3800362 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.56 43.0 3.88e-01 92.9% 59.2%
3601388 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.56 38.0 4.04e-01 94.1% 80.0%
4073616 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.55 37.0 4.09e-01 91.8% 89.2%
5042411 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.55 44.0 4.48e-01 100.0% 89.4%
5014224 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 4.32e-01 97.6% 95.7%
3975657 101.1.2.20 ↗ alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.54 33.0 3.43e-01 100.0% 65.3%
3405902 101.1.2.177 ↗ alpha arrays › HTH › HTH › winged helix domain › MARF1_LOTUS 0.54 43.0 4.43e-01 100.0% 93.8%
3739651 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.54 46.0 2.96e-01 100.0% 54.9%
3996654 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 3.51e-01 74.1% 69.1%
3209384 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.54 46.0 4.59e-01 100.0% 95.6%
4391985 101.1.2.137 ↗ alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.54 43.0 3.91e-01 100.0% 63.3%
3165321 101.1.2.280 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.54 45.0 4.50e-01 100.0% 90.0%
4979355 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 44.0 4.10e-01 100.0% 70.9%
5006536 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.53 44.0 4.35e-01 98.8% 85.6%
3584449 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.53 38.0 3.88e-01 100.0% 80.0%
3291053 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.53 36.0 3.95e-01 92.9% 92.3%
3426611 7581.1.1.41 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_N, Chal_sti_synt_C, FAE1_CUT1_RppA, ACP_syn_III 0.53 46.0 3.09e-01 100.0% 51.2%
4102573 101.1.2.28 ↗ alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.53 38.0 3.89e-01 97.6% 81.2%
5053763 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 4.20e-01 100.0% 84.4%
5026706 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 46.0 4.04e-01 100.0% 65.4%
3390936 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.52 41.0 3.91e-01 91.8% 73.0%
3315108 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.52 44.0 4.09e-01 100.0% 73.6%
4023459 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 4.19e-01 98.8% 92.5%
3666925 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.52 45.0 4.03e-01 100.0% 68.0%
4033043 616.1.1.41 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 0.52 42.0 4.18e-01 91.8% 97.8%
3754014 221.1.1.55 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RAWUL 0.51 38.0 3.96e-01 100.0% 83.7%
4942265 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 4.31e-01 98.8% 92.9%
3284376 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.51 35.0 3.84e-01 92.9% 93.8%
5052340 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 4.06e-01 91.8% 97.1%
4030596 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 4.04e-01 90.6% 85.9%
5012277 101.1.2.904 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_38 0.51 38.0 4.04e-01 100.0% 93.3%
3901409 327.16.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.51 34.0 3.34e-01 70.6% 63.3%
3630104 192.24.1.6 ↗ alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.51 42.0 2.87e-01 98.8% 71.3%
3942501 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 43.0 4.30e-01 100.0% 95.6%
3261727 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.50 44.0 4.04e-01 100.0% 85.2%
4188749 101.1.2.20 ↗ alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.50 41.0 4.18e-01 100.0% 95.0%
4670273 868.1.1.8 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › SLS1_C 0.50 41.0 3.07e-01 95.3% 95.2%
4937876 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.50 42.0 3.73e-01 100.0% 64.0%