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NC_048821.1__YP_009853533.1__HWC77_gp181__00181
Bact-VirNC_048821.1__YP_009853533.1__HWC77_gp181__00181
Identity
- Accession:
- NC_048821 ↗
- Kingdom:
- phage
Quality
93.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chimalliviridae›
Aphroditevirus›
Photobacterium_phage_PDCC-1
TaxID: 2664246
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 49-133
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3aqoA02 | 3.30.1360.200 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.61 | 50.0 | 4.33e-01 | 94.1% | 98.6% |
| 2irmA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.59 | 45.0 | 3.05e-01 | 82.4% | 61.7% |
| 1iruI00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.58 | 47.0 | 3.57e-01 | 90.6% | 66.4% |
| 2hq9B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 43.0 | 3.74e-01 | 81.2% | 86.9% |
| 2htdB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 42.0 | 3.78e-01 | 80.0% | 83.1% |
| 1fneA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.56 | 33.0 | 3.43e-01 | 96.5% | 62.0% |
| 3l5hA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 31.0 | 3.23e-01 | 95.3% | 57.7% |
| 3zq5A03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.55 | 40.0 | 3.36e-01 | 76.5% | 56.9% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.54 | 43.0 | 4.45e-01 | 92.9% | 100.0% |
| 3ld2B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 36.0 | 3.06e-01 | 70.6% | 89.5% |
| 4bwsF00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.54 | 38.0 | 4.07e-01 | 97.6% | 94.0% |
| 3dddA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 37.0 | 3.32e-01 | 74.1% | 79.2% |
| 2qzbA00 | 2.60.460.10 | Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain | 0.53 | 33.0 | 2.78e-01 | 76.5% | 37.2% |
| 1w1wA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 43.0 | 3.11e-01 | 92.9% | 74.5% |
| 3blnA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 37.0 | 3.16e-01 | 74.1% | 70.4% |
| 2dxqA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 36.0 | 3.11e-01 | 74.1% | 81.6% |
| 2i44B00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.52 | 41.0 | 2.90e-01 | 90.6% | 65.8% |
| 2qnuA00 | 3.40.1730.10 | Alpha Beta › 3-Layer(aba) Sandwich › pa0076 fold › pa0076 domain | 0.51 | 38.0 | 2.93e-01 | 80.0% | 65.9% |
| 1k8iA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.51 | 33.0 | 3.49e-01 | 90.6% | 75.3% |
| 1kcgC00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.50 | 42.0 | 3.38e-01 | 92.9% | 91.8% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5022518 | 4279.1.1.1 ↗ | a+b three layers › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DAC | 0.69 | 52.0 | 4.23e-01 | 80.0% | 76.8% |
| 4994324 | 4279.1.1.1 ↗ | a+b three layers › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DAC | 0.68 | 50.0 | 4.04e-01 | 77.6% | 77.5% |
| 5048619 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.67 | 52.0 | 3.96e-01 | 82.4% | 54.9% |
| 4996528 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.65 | 33.0 | 4.11e-01 | 80.0% | 82.0% |
| 3586250 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.63 | 41.0 | 4.70e-01 | 97.6% | 95.0% |
| 3782773 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.61 | 39.0 | 4.55e-01 | 74.1% | 100.0% |
| 4590943 | 1.1.5.44 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › SecDF_P1_head | 0.60 | 49.0 | 4.10e-01 | 92.9% | 99.4% |
| 3479367 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.58 | 41.0 | 4.61e-01 | 97.6% | 100.0% |
| 4339025 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.58 | 49.0 | 3.71e-01 | 96.5% | 85.9% |
| 3912902 | 233.1.1.3 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha | 0.58 | 34.0 | 3.44e-01 | 97.6% | 57.6% |
| 4382937 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.58 | 49.0 | 3.41e-01 | 96.5% | 62.3% |
| 4548121 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.57 | 31.0 | 3.40e-01 | 98.8% | 62.9% |
| 3953438 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.57 | 47.0 | 3.41e-01 | 92.9% | 67.8% |
| 4233827 | 1.1.5.44 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › SecDF_P1_head | 0.55 | 44.0 | 3.74e-01 | 90.6% | 98.7% |
| 3666940 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.55 | 38.0 | 3.35e-01 | 70.6% | 64.2% |
| 3692317 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.54 | 44.0 | 2.87e-01 | 89.4% | 42.1% |
| 3603013 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.54 | 44.0 | 4.09e-01 | 94.1% | 100.0% |
| 3705856 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.53 | 44.0 | 3.11e-01 | 94.1% | 44.7% |
| 3927863 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 38.0 | 3.82e-01 | 76.5% | 76.5% |
| 4338928 | 233.1.1.6 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 | 0.53 | 33.0 | 3.32e-01 | 96.5% | 60.0% |
| 4980473 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.53 | 41.0 | 3.72e-01 | 87.1% | 87.2% |
| 4931021 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.53 | 36.0 | 3.16e-01 | 72.9% | 68.6% |
| 3884395 | 233.1.1.3 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha | 0.52 | 31.0 | 3.05e-01 | 96.5% | 53.3% |
| 3729195 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.52 | 46.0 | 4.07e-01 | 98.8% | 84.0% |
| 3687025 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.52 | 46.0 | 4.06e-01 | 98.8% | 84.0% |
| 5076940 | 213.1.1.38 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_19 | 0.51 | 36.0 | 3.17e-01 | 74.1% | 76.3% |
| 1162187 | 233.1.1.8 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › M157_N_1 | 0.51 | 43.0 | 3.36e-01 | 90.6% | 83.6% |
| 4179984 | 865.1.1.2 ↗ | beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › TilS_C | 0.51 | 38.0 | 3.42e-01 | 78.8% | 93.0% |
| 3399597 | 11.1.4.91 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › EMP70 | 0.51 | 43.0 | 3.30e-01 | 97.6% | 91.2% |
| 4138644 | 5.1.3.19 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira | 0.51 | 40.0 | 3.00e-01 | 88.2% | 73.6% |
| 3803870 | 4196.1.1.0 ↗ | alpha complex topology › BRCA2 tower domain › BRCA2 tower domain › BRCA2 tower domain | 0.51 | 41.0 | 2.67e-01 | 88.2% | 84.3% |