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NC_048824.1__YP_009853776.1__HWC80_gp024__00024

Bact-Vir

NC_048824.1__YP_009853776.1__HWC80_gp024__00024

Identity

Accession:
NC_048824 ↗
Kingdom:
phage

Quality

50.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1230-1261_1279-1360
PDB
D2 high residues 1382-1516
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hz9A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.66 53.0 5.59e-01 95.6% 96.6%
2k3aA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.63 44.0 5.00e-01 71.9% 100.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3956333 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.87 75.0 7.66e-01 96.3% 93.1%
4882197 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.64 45.0 4.78e-01 71.9% 92.4%
4031159 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.63 50.0 4.79e-01 83.7% 95.5%
3964422 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 55.0 5.24e-01 99.3% 98.8%
3164898 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.56 33.0 3.77e-01 83.0% 81.1%
3389175 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 33.0 3.86e-01 87.4% 88.9%
3230520 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 32.0 3.80e-01 87.4% 88.9%
3503815 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 31.0 3.70e-01 77.8% 89.4%
3407848 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 34.0 3.86e-01 99.3% 90.5%
3414167 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 31.0 2.69e-01 85.9% 38.0%
3389311 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.50 33.0 3.77e-01 88.9% 91.0%
D3 medium residues 269-426
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20155.5 best TMP_3 47.4 2.70e-12 100.0% 84.9%
D4 medium residues 607-696
PDB
D5 medium residues 730-845
PDB
D6 medium residues 1576-1636
PDB
D7 medium residues 1764-1847
PDB