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NC_048825.1__YP_009853948.1__HWC81_gp85__00085

Bact-Vir

NC_048825.1__YP_009853948.1__HWC81_gp85__00085

Identity

Accession:
NC_048825 ↗
Kingdom:
phage

Quality

75.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kenoshavirus› Gordonia_phage_Crocheter

TaxID: 2656532

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-97
PDB
Domain cluster: rep: NC_048825.1__YP_009853943.1__HWC81_gp80__00080__D2-66
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.65 57.0 4.30e-01 100.0% 93.9%
3pquA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.64 56.0 4.17e-01 100.0% 84.7%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.64 54.0 4.14e-01 100.0% 56.1%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.60 46.0 4.31e-01 100.0% 67.1%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 4.44e-01 92.4% 84.4%
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 45.0 3.38e-01 86.4% 61.4%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 4.65e-01 100.0% 89.1%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.41e-01 90.9% 100.0%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 4.42e-01 98.5% 69.8%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 3.89e-01 97.0% 64.1%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.57e-01 98.5% 89.1%
4qmfB01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.56 39.0 3.69e-01 74.2% 65.9%
2pmbA01 3.30.1850.10 Alpha Beta › 2-Layer Sandwich › MCP/YpsA-like › MoCo carrier protein-like 0.56 39.0 3.45e-01 75.8% 63.6%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.77e-01 98.5% 61.9%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.08e-01 97.0% 34.9%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 42.0 3.85e-01 89.4% 95.7%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.59e-01 98.5% 53.5%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.95e-01 98.5% 64.1%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.77e-01 89.4% 75.2%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 4.05e-01 98.5% 76.0%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.56e-01 97.0% 58.6%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 4.26e-01 98.5% 85.5%
4aimA03 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.53 37.0 3.66e-01 74.2% 70.4%
2e9yB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.52 44.0 2.83e-01 95.5% 19.9%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.89e-01 100.0% 72.0%
1tuaA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 38.0 3.64e-01 100.0% 66.7%
1y0nA00 1.10.10.610 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › YehU-like 0.51 37.0 3.70e-01 81.8% 85.9%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.93e-01 98.5% 87.3%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.51 39.0 3.47e-01 87.9% 76.2%
2b0lC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 38.0 3.45e-01 98.5% 58.5%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5076160 284.1.2.0 ↗ a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.68 58.0 4.84e-01 100.0% 55.3%
3924787 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.67 59.0 5.08e-01 100.0% 62.9%
3938183 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.66 58.0 5.03e-01 100.0% 62.9%
3272707 327.11.2.39 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_3 0.66 36.0 3.66e-01 89.4% 52.3%
3883687 11.1.1.365 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP1_ZP4_Ig-like 0.60 41.0 3.56e-01 84.8% 44.8%
4984847 101.1.2.128 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.60 49.0 5.00e-01 100.0% 89.2%
3185841 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.60 35.0 3.45e-01 90.9% 54.3%
4991792 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 48.0 4.74e-01 98.5% 82.6%
4979355 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 3.88e-01 97.0% 52.7%
3168268 11.2.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI3K_C2 0.56 48.0 3.42e-01 100.0% 85.3%
5043608 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 4.50e-01 98.5% 86.8%
4167416 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.55 38.0 3.80e-01 74.2% 71.4%
5006536 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.54 41.0 3.72e-01 97.0% 60.0%
3216043 223.2.1.31 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 0.54 40.0 3.11e-01 83.3% 60.0%
5069873 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.80e-01 98.5% 64.7%
5016457 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.83e-01 97.0% 65.9%
3792160 328.7.1.0 ↗ a+b two layers › IF3-like › Smr domain › Smr domain 0.53 37.0 3.14e-01 72.7% 100.0%
4022438 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.53 40.0 2.61e-01 81.8% 62.1%
3729903 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 4.18e-01 97.0% 84.3%
4946714 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.53 43.0 3.97e-01 97.0% 68.9%
3883014 101.1.2.490 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_CHMP7 0.53 43.0 4.04e-01 98.5% 75.0%
3959747 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.52 44.0 4.23e-01 100.0% 84.0%
3538049 11.1.1.636 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL17_R_N 0.52 37.0 2.87e-01 77.3% 75.4%
3272787 213.1.1.19 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 0.52 37.0 2.89e-01 78.8% 52.5%
2879783 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.51 46.0 4.44e-01 100.0% 93.3%
3954037 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.51 42.0 4.14e-01 100.0% 85.3%
5049782 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 39.0 3.22e-01 86.4% 50.4%
3782381 101.1.2.407 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.51 44.0 3.59e-01 97.0% 64.8%
3596237 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.51 36.0 3.60e-01 100.0% 74.3%
3200036 101.1.2.407 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.50 44.0 3.48e-01 98.5% 62.9%
3583168 101.1.2.490 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_CHMP7 0.50 43.0 3.69e-01 98.5% 59.1%