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NC_048826.1__YP_009853968.1__HWC82_gp14__00014

Bact-Vir

NC_048826.1__YP_009853968.1__HWC82_gp14__00014

Identity

Accession:
NC_048826 ↗
Kingdom:
phage

Quality

63.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lambovirus› Gordonia_phage_Yikes

TaxID: 2656545

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 149-229
PDB
Domain cluster: rep: MH884509.1__AYP68439.1__BboS125_00070__00069__D112-199
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 40.0 3.62e-01 100.0% 44.0%
5undA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.62 26.0 3.08e-01 77.8% 55.6%
3i01A01 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.60 46.0 3.55e-01 81.5% 87.6%
2vycA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 48.0 3.69e-01 87.7% 86.8%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 45.0 3.75e-01 82.7% 88.0%
2drpA02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.57 22.0 3.28e-01 71.6% 86.2%
2zetC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 39.0 3.23e-01 96.3% 41.1%
1yuiA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 23.0 2.73e-01 70.4% 50.0%
1hyuA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 40.0 3.22e-01 82.7% 96.7%
1ej6A01 3.90.1810.10 Alpha Beta › Alpha-Beta Complex › Reovirus components fold › Reovirus components 0.53 45.0 2.92e-01 95.1% 23.2%
1tuzA00 1.10.238.110 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Diacylglycerol kinase alpha. 0.52 36.0 3.22e-01 74.1% 50.0%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3407220 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.64 26.0 3.94e-01 74.1% 96.7%
3396003 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 25.0 3.62e-01 74.1% 80.0%
3861352 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 33.0 3.96e-01 93.8% 78.0%
3534412 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 24.0 3.67e-01 70.4% 90.0%
3710953 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.62 24.0 3.82e-01 74.1% 100.0%
3407035 386.1.1.60 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › B129_C2H2-zf 0.61 24.0 3.61e-01 74.1% 93.3%
1180392 3016.1.1.9 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › OKR_DC_1 0.61 50.0 3.93e-01 88.9% 99.4%
3235701 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.61 24.0 3.73e-01 74.1% 93.3%
3677363 5054.1.1.59 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 0.59 46.0 3.09e-01 82.7% 31.2%
3936248 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 43.0 4.18e-01 80.2% 95.8%
3854051 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 25.0 3.26e-01 84.0% 71.1%
3213876 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 23.0 3.08e-01 70.4% 67.5%
3410422 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 26.0 3.69e-01 84.0% 94.3%
3920362 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.56 47.0 3.15e-01 90.1% 23.9%
4991162 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.54 45.0 3.26e-01 88.9% 37.7%
4356087 230.4.1.1 ↗ a+b two layers › T-fold › ApbE-like › ApbE-like › ApbE 0.53 46.0 3.45e-01 93.8% 41.6%
3805561 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.52 43.0 3.67e-01 87.7% 60.8%
4989659 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.52 35.0 3.06e-01 70.4% 86.9%
4503505 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.51 37.0 3.33e-01 77.8% 74.2%
3589727 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 36.0 3.43e-01 85.2% 62.4%
3419597 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.50 42.0 3.66e-01 91.4% 62.4%
None — 0.50 45.0 2.95e-01 100.0% 36.7%
5064650 205.1.1.16 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.50 36.0 3.38e-01 76.5% 83.8%