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NC_048827.1__YP_009854190.1__HWC83_gp098__00138

Bact-Vir

NC_048827.1__YP_009854190.1__HWC83_gp098__00138

Identity

Accession:
NC_048827 ↗
Kingdom:
phage

Quality

50.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Kujavirus› Vibrio_phage_vB_VchM_Kuja

TaxID: 2686437

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 98-128_166-282
PDB
Domain cluster: rep: IMGVR_UViG_3300039190_000305-3300039190-Ga0399989_003201_3_1937__D82-97_167-336
D2 medium residues 26-97
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pltA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.68 49.0 3.46e-01 75.0% 32.7%
4wv4B00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.68 41.0 3.76e-01 81.9% 47.3%
2kz6A01 6.10.140.1310 Special › Helix non-globular › Helix Hairpins › 0.55 43.0 4.19e-01 94.4% 77.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3710238 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.68 50.0 3.79e-01 77.8% 58.2%
3199024 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 44.0 3.17e-01 75.0% 55.7%
3269103 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.60 45.0 3.53e-01 79.2% 57.9%
3241617 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.59 47.0 2.80e-01 93.1% 10.6%
4809791 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 41.0 2.80e-01 93.1% 22.5%
D3 medium residues 290-426
PDB
Domain cluster: rep: DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00035__D226-373
D4 medium residues 489-543
PDB
D5 medium residues 544-613
PDB
D6 medium residues 614-695
PDB
D7 medium residues 973-1049
PDB