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NC_048828.1__YP_009854422.1__HWC84_gp153__00184
Bact-VirNC_048828.1__YP_009854422.1__HWC84_gp153__00184
Identity
- Accession:
- NC_048828 ↗
- Kingdom:
- phage
Quality
88.6
mean pLDDT
Taxonomy
TaxID: 2678601
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-56
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5zi7A04 | 2.60.40.1840 | Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain | 0.68 | 46.0 | 4.02e-01 | 71.4% | 96.6% |
| 2e63A00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.64 | 51.0 | 3.84e-01 | 100.0% | 62.4% |
| 4mv2A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 41.0 | 3.22e-01 | 100.0% | 34.2% |
| 2eaqA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.58 | 40.0 | 3.53e-01 | 75.0% | 84.3% |
| 1u04A04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 40.0 | 2.78e-01 | 76.8% | 46.4% |
| 2jwpA00 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.57 | 47.0 | 3.47e-01 | 100.0% | 39.7% |
| 3cihA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 46.0 | 3.61e-01 | 100.0% | 60.2% |
| 1i1rA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 3.61e-01 | 92.9% | 52.0% |
| 2k5iA02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.52 | 38.0 | 3.48e-01 | 80.4% | 61.5% |
| 4h3wA02 | 2.60.120.1260 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 44.0 | 3.30e-01 | 100.0% | 48.7% |
| 1pvdA02 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.52 | 39.0 | 3.02e-01 | 89.3% | 91.6% |
| 7bexA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 38.0 | 2.74e-01 | 78.6% | 89.2% |
| 1loxA02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.51 | 43.0 | 3.55e-01 | 100.0% | 54.1% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3865117 | 10.1.1.23 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neuralized | 0.73 | 62.0 | 4.38e-01 | 100.0% | 60.0% |
| 3699601 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.73 | 55.0 | 5.01e-01 | 82.1% | 68.0% |
| 4344089 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.63 | 41.0 | 4.13e-01 | 92.9% | 67.3% |
| 1174966 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.54 | 39.0 | 3.52e-01 | 78.6% | 57.6% |
| 4362772 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 35.0 | 3.59e-01 | 94.6% | 69.1% |
| 4403708 | 10.32.1.41 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GOLD_2 | 0.54 | 45.0 | 3.57e-01 | 92.9% | 69.6% |
| 4032535 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.54 | 43.0 | 3.16e-01 | 91.1% | 58.2% |
| 3403837 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 36.0 | 3.04e-01 | 71.4% | 93.3% |
| 3207467 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.53 | 37.0 | 2.84e-01 | 76.8% | 58.1% |
| 3478311 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 41.0 | 3.41e-01 | 92.9% | 50.0% |
| 3514307 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.51 | 41.0 | 3.09e-01 | 91.1% | 35.2% |
| 3908766 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.51 | 41.0 | 3.14e-01 | 92.9% | 36.6% |
| 3933749 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.50 | 40.0 | 3.32e-01 | 92.9% | 50.0% |
D2
medium
residues 57-113
Domain cluster:
rep: NC_019401.1__YP_006987205.1__GAP32_102__00103__D74-136
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4v02C00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.82 | 74.0 | 5.73e-01 | 100.0% | 67.2% |
| 4kh3A00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.79 | 64.0 | 3.71e-01 | 91.2% | 12.2% |
| 1k4zA00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.77 | 67.0 | 4.90e-01 | 100.0% | 42.7% |
| 2b0rB00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.76 | 65.0 | 4.79e-01 | 100.0% | 43.0% |
| 3zppA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.74 | 64.0 | 3.83e-01 | 100.0% | 28.5% |
| 3petA00 | 2.160.20.120 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.74 | 63.0 | 4.29e-01 | 100.0% | 29.8% |
| 4w8qA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.73 | 62.0 | 4.20e-01 | 100.0% | 39.3% |
| 5olpA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.70 | 60.0 | 3.57e-01 | 100.0% | 28.9% |
| 5jlvC00 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.68 | 57.0 | 4.93e-01 | 100.0% | 69.1% |
| 2f3lA00 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.67 | 55.0 | 4.41e-01 | 100.0% | 50.8% |
| 3sipC00 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 43.0 | 3.25e-01 | 73.7% | 77.6% |
| 4arnA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.61 | 51.0 | 3.40e-01 | 100.0% | 32.5% |
| 1poiA01 | 3.40.1080.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase | 0.59 | 44.0 | 2.95e-01 | 84.2% | 28.0% |
| 1xr4B01 | 3.40.1080.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase | 0.59 | 46.0 | 3.24e-01 | 96.5% | 34.7% |
| 1piwA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 46.0 | 3.65e-01 | 93.0% | 83.9% |
| 1k6dB00 | 3.40.1080.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase | 0.58 | 46.0 | 3.26e-01 | 96.5% | 36.1% |
| 1xttB00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 48.0 | 3.38e-01 | 100.0% | 53.8% |
| 3l6eA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 42.0 | 3.05e-01 | 93.0% | 78.6% |
| 4qjiB00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.51 | 43.0 | 2.98e-01 | 100.0% | 56.5% |
| 4kruA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 42.0 | 2.94e-01 | 100.0% | 50.5% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4020264 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.89 | 82.0 | 6.55e-01 | 100.0% | 58.1% |
| 5041137 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.87 | 73.0 | 6.76e-01 | 89.5% | 80.0% |
| 5006685 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.85 | 78.0 | 5.72e-01 | 100.0% | 42.9% |
| 4935712 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.84 | 77.0 | 5.62e-01 | 100.0% | 41.4% |
| 4965634 | 207.14.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin | 0.84 | 77.0 | 5.78e-01 | 100.0% | 46.2% |
| 4935713 | 207.14.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin | 0.83 | 76.0 | 5.91e-01 | 100.0% | 52.2% |
| 4971789 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.83 | 75.0 | 5.64e-01 | 100.0% | 45.4% |
| 5032703 | 207.14.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin | 0.82 | 74.0 | 5.84e-01 | 100.0% | 53.0% |
| 5039608 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.82 | 72.0 | 6.74e-01 | 96.5% | 82.9% |
| 4493843 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.81 | 73.0 | 5.94e-01 | 100.0% | 76.2% |
| 3596944 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.81 | 67.0 | 4.88e-01 | 100.0% | 34.2% |
| 5017838 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.81 | 71.0 | 5.24e-01 | 100.0% | 39.3% |
| 4026564 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.81 | 73.0 | 4.94e-01 | 100.0% | 31.3% |
| 4929387 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.80 | 71.0 | 6.68e-01 | 100.0% | 85.7% |
| 4964741 | 207.14.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin | 0.80 | 70.0 | 6.08e-01 | 100.0% | 67.8% |
| 4497421 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.79 | 71.0 | 6.08e-01 | 100.0% | 67.8% |
| 4406918 | 207.6.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › FARP | 0.78 | 67.0 | 5.21e-01 | 100.0% | 46.9% |
| 3855439 | 207.8.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD | 0.77 | 69.0 | 4.33e-01 | 100.0% | 36.5% |
| 3752024 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.77 | 68.0 | 4.14e-01 | 100.0% | 16.9% |
| 4981294 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.77 | 67.0 | 4.77e-01 | 100.0% | 49.1% |
| 3744798 | 208.1.1.43 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › DUF1720 | 0.76 | 65.0 | 4.83e-01 | 100.0% | 37.3% |
| 4949774 | 208.7.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein | 0.76 | 66.0 | 4.95e-01 | 100.0% | 40.0% |
| 3650986 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.76 | 67.0 | 4.18e-01 | 100.0% | 24.2% |
| 3713639 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.75 | 64.0 | 4.24e-01 | 100.0% | 28.0% |
| 3629898 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.74 | 62.0 | 5.71e-01 | 93.0% | 94.5% |
| 3391275 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.74 | 62.0 | 5.20e-01 | 100.0% | 53.3% |
| 3572525 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.73 | 60.0 | 5.45e-01 | 100.0% | 67.5% |
| 4378528 | 207.14.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin | 0.73 | 63.0 | 5.31e-01 | 100.0% | 60.0% |
| 3705677 | 207.2.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.73 | 62.0 | 3.66e-01 | 100.0% | 20.8% |
| 3963707 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.73 | 61.0 | 5.53e-01 | 100.0% | 70.0% |
| 3830293 | 208.7.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein | 0.73 | 61.0 | 5.49e-01 | 100.0% | 70.6% |
| 3684090 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.69 | 56.0 | 5.22e-01 | 94.7% | 81.3% |
| 3708280 | 207.3.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Insect cysteine-rich antifreeze protein › Insect cysteine-rich antifreeze protein | 0.69 | 49.0 | 4.38e-01 | 100.0% | 51.8% |
| 3174583 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.68 | 56.0 | 4.54e-01 | 98.2% | 58.3% |
| 3870521 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.68 | 47.0 | 4.33e-01 | 73.7% | 93.3% |
| 4451235 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.68 | 57.0 | 3.75e-01 | 100.0% | 47.2% |
| 2163978 | 207.10.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Arctic yeast antifreeze protein › Arctic yeast antifreeze protein › Ice_binding | 0.67 | 55.0 | 3.76e-01 | 100.0% | 34.0% |
| 4498099 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.66 | 55.0 | 3.71e-01 | 100.0% | 68.2% |
| 3813353 | 207.8.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD,SufBD_N | 0.66 | 55.0 | 3.41e-01 | 100.0% | 21.3% |
| 3803729 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.60 | 44.0 | 4.27e-01 | 100.0% | 72.3% |