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NC_048830.1__YP_009854534.1__HWC86_gp03__00003

Bact-Vir

NC_048830.1__YP_009854534.1__HWC86_gp03__00003

Identity

Accession:
NC_048830 ↗
Kingdom:
phage

Quality

81.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Winoviridae› Pippivirus› Flavobacterium_phage_vB_FspM_pippi8-1

TaxID: 2686244

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-143
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.77 47.0 5.79e-01 95.8% 98.6%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 32.0 4.24e-01 91.7% 76.2%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 30.0 3.93e-01 90.8% 72.7%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 30.0 3.97e-01 91.7% 77.4%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 27.0 3.43e-01 90.8% 63.9%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 29.0 3.80e-01 90.8% 79.4%
2qlvB02 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 21.0 3.44e-01 94.2% 89.5%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 21.0 3.45e-01 94.2% 94.6%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.59 23.0 3.24e-01 95.0% 76.5%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 26.0 3.17e-01 90.8% 66.7%
3qwuA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.56 38.0 3.32e-01 97.5% 46.1%
3qr8A01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.55 34.0 3.94e-01 95.8% 88.1%
2ja9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 35.0 4.06e-01 93.3% 100.0%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5021275 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 58.0 6.07e-01 92.5% 95.5%
5029914 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.59 24.0 3.27e-01 96.7% 72.7%
3680043 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 42.0 4.30e-01 76.7% 97.5%
4836960 375.5.1.1 ↗ few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like › NOB1_Zn_bind 0.56 30.0 3.72e-01 78.3% 85.9%
3489384 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 45.0 3.75e-01 88.3% 75.8%
5081146 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 33.0 3.74e-01 92.5% 82.0%
3670182 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.54 38.0 3.80e-01 87.5% 70.4%