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NC_048844.1__YP_009855508.1__HWD00_gp22__00022
Bact-VirNC_048844.1__YP_009855508.1__HWD00_gp22__00022
Identity
- Accession:
- NC_048844 ↗
- Kingdom:
- phage
Quality
90.0
mean pLDDT
Taxonomy
TaxID: 2686279
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-94
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wnhA02 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 43.0 | 3.98e-01 | 75.5% | 54.2% |
| 3ke7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 42.0 | 3.77e-01 | 71.3% | 48.9% |
| 4k15A00 | 2.60.40.3860 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 44.0 | 3.90e-01 | 87.2% | 50.0% |
| 3h4zB03 | 3.15.10.50 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › | 0.62 | 55.0 | 4.42e-01 | 100.0% | 71.7% |
| 4h61A00 | 3.10.450.580 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mediator complex, subunit Med6 | 0.62 | 43.0 | 3.80e-01 | 87.2% | 48.9% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 37.0 | 4.03e-01 | 77.7% | 72.4% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.61 | 34.0 | 4.23e-01 | 70.2% | 92.9% |
| 2jq5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 39.0 | 3.50e-01 | 73.4% | 48.4% |
| 3cnxA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 41.0 | 3.65e-01 | 74.5% | 49.3% |
| 5aigA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 43.0 | 3.94e-01 | 89.4% | 58.9% |
| 4ggtB00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.58 | 41.0 | 3.97e-01 | 98.9% | 65.1% |
| 3ci0K01 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.58 | 52.0 | 5.03e-01 | 100.0% | 90.4% |
| 1tp6A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 41.0 | 3.71e-01 | 73.4% | 86.5% |
| 3f9sB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 44.0 | 3.86e-01 | 85.1% | 54.6% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.57 | 34.0 | 4.00e-01 | 81.9% | 87.3% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.57 | 33.0 | 3.85e-01 | 76.6% | 88.1% |
| 3dxoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 37.0 | 3.47e-01 | 74.5% | 52.1% |
| 3f7sA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 41.0 | 3.63e-01 | 76.6% | 53.5% |
| 6wilA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.56 | 49.0 | 3.38e-01 | 100.0% | 50.1% |
| 4j8tA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 38.0 | 3.49e-01 | 72.3% | 58.6% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.55 | 32.0 | 3.80e-01 | 84.0% | 90.0% |
| 2cc3A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.55 | 38.0 | 3.36e-01 | 73.4% | 59.0% |
| 3wlvA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.54 | 45.0 | 3.23e-01 | 93.6% | 79.9% |
| 8p97A01 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.53 | 46.0 | 2.87e-01 | 98.9% | 43.1% |
| 3lygA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 36.0 | 3.38e-01 | 87.2% | 54.2% |
| 1rm6D04 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.53 | 46.0 | 3.50e-01 | 97.9% | 72.5% |
| 3qktD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 39.0 | 2.76e-01 | 89.4% | 23.6% |
| 2yh6D00 | 3.30.530.50 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.53 | 42.0 | 4.02e-01 | 86.2% | 79.1% |
| 6fokB01 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.52 | 45.0 | 2.81e-01 | 100.0% | 37.4% |
| 3a7rA02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.52 | 41.0 | 4.24e-01 | 98.9% | 91.0% |
| 4kz1A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.52 | 36.0 | 3.23e-01 | 72.3% | 58.5% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 35.0 | 3.82e-01 | 90.4% | 89.2% |
| 1h7zA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.52 | 36.0 | 2.90e-01 | 72.3% | 96.3% |
| 1kacA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.51 | 37.0 | 3.05e-01 | 77.7% | 96.2% |
| 3hlkA01 | 2.60.40.2240 | Mainly Beta › Sandwich › Immunoglobulin-like › Acyl-CoA thioester hydrolase/BAAT N-terminal domain | 0.51 | 40.0 | 3.54e-01 | 84.0% | 58.5% |
| 3ebtA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 41.0 | 3.74e-01 | 91.5% | 67.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4974213 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.69 | 36.0 | 2.80e-01 | 100.0% | 23.6% |
| 4977517 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.68 | 41.0 | 4.53e-01 | 75.5% | 74.7% |
| 3192405 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.68 | 52.0 | 4.01e-01 | 79.8% | 83.9% |
| 4268461 | 274.1.1.5 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor | 0.64 | 46.0 | 4.82e-01 | 100.0% | 83.5% |
| 3735680 | 2008.1.1.143 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 | 0.62 | 47.0 | 3.33e-01 | 80.9% | 30.7% |
| 3927081 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 38.0 | 2.68e-01 | 74.5% | 17.8% |
| 3821013 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.60 | 42.0 | 2.61e-01 | 72.3% | 47.9% |
| 3521628 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.60 | 48.0 | 4.37e-01 | 86.2% | 72.0% |
| 3241172 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.59 | 38.0 | 3.61e-01 | 76.6% | 52.2% |
| 5078784 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.59 | 44.0 | 3.27e-01 | 100.0% | 29.0% |
| 3241827 | 243.1.1.75 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 | 0.58 | 38.0 | 3.49e-01 | 83.0% | 50.8% |
| 5011158 | 331.3.1.7 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG | 0.57 | 45.0 | 4.00e-01 | 100.0% | 57.6% |
| 3974189 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.56 | 49.0 | 4.49e-01 | 98.9% | 79.2% |
| 3512269 | 79.1.1.16 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › DUF1983 | 0.56 | 40.0 | 4.07e-01 | 85.1% | 77.8% |
| 4992265 | 7504.1.1.2 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T | 0.55 | 45.0 | 3.86e-01 | 90.4% | 70.0% |
| 3703112 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 39.0 | 3.61e-01 | 79.8% | 57.5% |
| 4026006 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.55 | 38.0 | 4.02e-01 | 95.7% | 83.7% |
| 3907198 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.54 | 40.0 | 3.19e-01 | 92.6% | 36.6% |
| 3970661 | 231.1.1.0 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain | 0.54 | 48.0 | 2.97e-01 | 100.0% | 35.4% |
| 3390634 | 243.1.1.41 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Coa1 | 0.54 | 41.0 | 4.15e-01 | 98.9% | 81.1% |
| 3362831 | 3186.1.1.0 ↗ | a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK | 0.52 | 45.0 | 4.12e-01 | 98.9% | 96.2% |
| 5036054 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.51 | 37.0 | 2.41e-01 | 90.4% | 15.5% |
| 4312461 | 330.11.1.1 ↗ | a+b two layers › dsRBD-like › Anti-lipopolysaccharide factor (ALF) › Anti-lipopolysaccharide factor (ALF) › Anti-LPS-SCYG | 0.51 | 38.0 | 3.76e-01 | 92.6% | 75.5% |
| 4644143 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.50 | 43.0 | 3.96e-01 | 98.9% | 71.5% |
| 3454249 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 33.0 | 3.23e-01 | 100.0% | 60.0% |
| 3932499 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.50 | 34.0 | 2.34e-01 | 71.3% | 17.7% |