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NC_048844.1__YP_009855527.1__HWD00_gp41__00041

Bact-Vir

NC_048844.1__YP_009855527.1__HWD00_gp41__00041

Identity

Accession:
NC_048844 ↗
Kingdom:
phage

Quality

72.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Muminvirus› Flavobacterium_phage_vB_FspS_tooticki6-1

TaxID: 2686279

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-74
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.71 51.0 4.53e-01 95.1% 52.5%
4ehcA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.63 54.0 3.28e-01 100.0% 82.5%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 52.0 3.85e-01 100.0% 73.0%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 48.0 4.28e-01 100.0% 68.5%
5u78C00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 53.0 3.89e-01 100.0% 81.9%
2wxwA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.60 44.0 3.09e-01 87.8% 66.5%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.59 48.0 3.42e-01 100.0% 61.0%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 50.0 3.57e-01 100.0% 62.3%
1v5pA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 48.0 3.73e-01 100.0% 84.5%
3liyA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.59 49.0 3.70e-01 100.0% 59.5%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.23e-01 100.0% 71.4%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 46.0 3.61e-01 100.0% 81.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 46.0 3.42e-01 100.0% 62.1%
1mw7A02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.56 44.0 3.65e-01 97.6% 52.9%
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.56 43.0 3.21e-01 100.0% 75.4%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 3.51e-01 100.0% 71.0%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.55 44.0 4.27e-01 100.0% 94.0%
1qfjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 40.0 3.40e-01 100.0% 56.0%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.53 35.0 3.09e-01 100.0% 37.9%
2lw6A00 2.60.320.40 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.53 39.0 3.49e-01 100.0% 86.3%
4lplA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 42.0 3.05e-01 100.0% 62.0%
6jowA02 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.52 40.0 2.65e-01 95.1% 19.7%
1hezE00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 40.0 3.68e-01 97.6% 95.1%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.51 40.0 3.60e-01 97.6% 87.7%
1xf1A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.22e-01 100.0% 62.4%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.50 38.0 2.98e-01 97.6% 44.3%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 41.0 2.88e-01 100.0% 30.3%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5071179 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 52.0 4.69e-01 80.5% 58.3%
4930970 375.1.1.338 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7479 0.72 52.0 4.82e-01 80.5% 63.6%
5061109 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 52.0 4.65e-01 80.5% 60.0%
3595953 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 51.0 3.37e-01 80.5% 20.5%
3265348 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 53.0 4.08e-01 100.0% 77.9%
3257630 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 51.0 3.67e-01 100.0% 63.1%
3292855 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.60 50.0 3.64e-01 100.0% 66.4%
3500872 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 50.0 3.82e-01 100.0% 81.0%
4028452 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 50.0 3.57e-01 100.0% 66.7%
3609378 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 49.0 3.87e-01 100.0% 80.0%
3828657 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 50.0 3.84e-01 100.0% 87.0%
3234124 355.1.1.2 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › PSI 0.59 44.0 4.09e-01 92.7% 61.7%
3643227 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.59 49.0 3.43e-01 100.0% 57.3%
3408330 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 45.0 3.65e-01 100.0% 52.0%
3546981 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.58 48.0 3.39e-01 100.0% 66.4%
3579945 220.1.1.49 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH 0.57 46.0 3.24e-01 100.0% 59.4%
3250163 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 3.76e-01 100.0% 73.7%
3405824 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.54 40.0 3.20e-01 100.0% 57.5%
3255140 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.54 44.0 3.07e-01 100.0% 51.5%
5037563 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.24e-01 100.0% 49.0%
4946759 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.17e-01 97.6% 50.5%
5062921 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.16e-01 100.0% 54.0%
5061361 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.37e-01 100.0% 67.5%
3885267 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.50 37.0 2.83e-01 97.6% 34.8%
2754129 11.1.1.343 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ScpA_C 0.50 39.0 3.14e-01 100.0% 62.1%