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NC_048848.1__YP_009855852.1__HWD04_gp12__00012

Bact-Vir

NC_048848.1__YP_009855852.1__HWD04_gp12__00012

Identity

Accession:
NC_048848 ↗
Kingdom:
phage

Quality

81.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Arawnvirus› Butyrivibrio_phage_Arawn

TaxID: 2724180

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-103
PDB
Domain cluster: rep: KU848187.1__ANJ65472.1__PLE2_14__00013__D12-112
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 39.0 3.74e-01 78.1% 57.5%
1binA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 44.0 3.94e-01 81.2% 93.7%
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 42.0 3.76e-01 83.3% 95.8%
1hlbA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 41.0 3.53e-01 79.2% 87.3%
2af7D00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.55 32.0 3.02e-01 96.9% 44.6%
3frrA00 1.20.1260.60 Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 0.54 41.0 3.32e-01 80.2% 79.0%
2r4gA02 1.10.10.1970 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TERT catalytic subunit-like 0.54 28.0 3.38e-01 79.2% 75.0%
1x9fD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 41.0 3.66e-01 82.3% 96.4%
2zs0A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 41.0 3.69e-01 83.3% 99.3%
3nynA03 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.53 39.0 4.25e-01 85.4% 93.8%
2oifB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 40.0 3.58e-01 84.4% 95.4%
3ls1A00 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.53 41.0 3.72e-01 84.4% 82.0%
3pjaJ01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.53 35.0 3.22e-01 84.4% 50.4%
2mabA00 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.53 38.0 3.66e-01 95.8% 66.1%
3beyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.52 28.0 2.89e-01 96.9% 52.1%
2qeuB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.52 31.0 2.84e-01 94.8% 42.1%
5o5jT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.50 26.0 2.76e-01 99.0% 55.3%
2lxlA00 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.50 32.0 2.70e-01 72.9% 38.0%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965726 6050.1.1.0 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.79 65.0 6.84e-01 99.0% 98.8%
4927432 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.61 46.0 4.98e-01 93.8% 97.5%
4429233 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.60 41.0 4.31e-01 97.9% 77.6%
3947952 3103.1.1.3 ↗ alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Phage_TAC_15 0.58 51.0 5.07e-01 100.0% 99.0%
4083216 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.57 40.0 4.10e-01 96.9% 75.6%
4051624 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.57 34.0 3.40e-01 83.3% 54.3%
4984680 3962.1.1.1 ↗ alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit › HsdM_N 0.56 49.0 4.15e-01 100.0% 84.7%
3591596 102.5.1.0 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.56 35.0 3.94e-01 80.2% 85.7%
5049878 5050.1.1.10 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 0.55 46.0 3.49e-01 92.7% 87.1%
3944785 192.29.1.183 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF28674 0.55 43.0 3.82e-01 85.4% 85.5%
5074033 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.55 38.0 2.97e-01 100.0% 34.2%
3941077 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.55 41.0 3.63e-01 79.2% 91.4%
3244338 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.54 41.0 3.45e-01 81.2% 83.9%
3595391 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 39.0 3.59e-01 100.0% 56.9%
4007956 5069.1.1.61 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › PF28674 0.54 42.0 3.72e-01 85.4% 85.5%
3349005 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 32.0 3.54e-01 94.8% 74.7%
3483811 2004.1.1.189 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 0.53 41.0 3.09e-01 84.4% 44.8%
3465481 148.1.3.14 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ORC4_C 0.53 42.0 3.83e-01 87.5% 73.8%
3934380 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 35.0 3.93e-01 96.9% 95.7%
4588041 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.52 37.0 3.86e-01 97.9% 78.9%
3501428 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.51 38.0 3.31e-01 79.2% 91.6%
3278832 106.1.1.11 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.51 41.0 3.67e-01 86.5% 90.4%
3391286 101.1.1.66 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_5 0.51 36.0 3.62e-01 88.5% 73.7%
3933874 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.51 39.0 3.12e-01 84.4% 70.0%
5029495 3745.1.1.1 ↗ alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.51 43.0 3.09e-01 94.8% 73.8%
4926806 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.98e-01 96.9% 86.7%
4483958 6155.2.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › PnuC › PnuC › NMN_transporter 0.51 39.0 3.03e-01 84.4% 74.4%
3314172 609.1.1.1 ↗ alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › PARP_reg 0.51 44.0 3.80e-01 100.0% 60.6%
3994003 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.51 40.0 3.44e-01 87.5% 90.0%
3623877 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.50 40.0 3.44e-01 87.5% 85.0%