←Back to structures

NC_048848.1__YP_009855857.1__HWD04_gp17__00017

Bact-Vir

NC_048848.1__YP_009855857.1__HWD04_gp17__00017

Identity

Accession:
NC_048848 ↗
Kingdom:
phage

Quality

94.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Arawnvirus› Butyrivibrio_phage_Arawn

TaxID: 2724180

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 24-34_71-84_105-140
PDB
Domain cluster: representative
D2 medium residues 35-70_85-104
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wtxA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 58.0 4.94e-01 100.0% 63.9%
1uokA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 47.0 4.32e-01 89.3% 79.5%
2f68X01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 49.0 3.81e-01 100.0% 70.3%
2pn5A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.58 47.0 4.08e-01 100.0% 88.1%
2qsvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 3.95e-01 100.0% 85.7%
3l5hA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 4.18e-01 94.6% 75.6%
3webA00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 49.0 3.78e-01 100.0% 87.9%
3e9tB00 2.60.40.2030 Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain 0.56 46.0 3.85e-01 100.0% 61.1%
1k42A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 44.0 3.31e-01 96.4% 36.3%
1r4sA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.55 41.0 2.67e-01 85.7% 48.3%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 36.0 2.57e-01 89.3% 21.1%
4hj1B03 2.60.40.3770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 3.97e-01 100.0% 64.4%
4jg9A00 2.60.40.3830 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 44.0 3.47e-01 100.0% 52.5%
2e26A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 45.0 3.13e-01 100.0% 70.3%
2a74A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.72e-01 100.0% 54.9%
2r7eB01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.53 45.0 3.20e-01 100.0% 91.8%
1qgwA00 3.90.510.10 Alpha Beta › Alpha-Beta Complex › Cryptophytan Phycoerythrin (Alpha-1 Chain); Chain A › Phycoerythrin alpha chain 0.52 37.0 3.41e-01 94.6% 56.6%
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 41.0 3.72e-01 89.3% 79.7%
4n1vA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.52 36.0 3.15e-01 94.6% 45.2%
3u7vA02 2.60.220.20 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › putative beta-Galactosidase from caulobacter crescentus 0.52 37.0 2.85e-01 73.2% 37.5%
7jsnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 39.0 2.81e-01 91.1% 69.4%
1ohgA01 3.30.2400.10 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 0.51 38.0 3.04e-01 91.1% 90.4%
1pgsA02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 2.98e-01 94.6% 96.0%
6hbeA01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.51 41.0 3.30e-01 100.0% 69.9%
2rikA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.63e-01 100.0% 64.1%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3888005 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.67 58.0 4.70e-01 100.0% 65.5%
5062603 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 57.0 4.50e-01 100.0% 67.5%
5037247 12.6.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.64 53.0 5.15e-01 92.9% 96.9%
4022868 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 52.0 4.26e-01 100.0% 69.5%
3454136 11.1.1.264 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_GlcNase 0.60 49.0 4.06e-01 100.0% 67.5%
3964232 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 50.0 4.00e-01 100.0% 80.0%
4966290 2003.1.5.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.59 50.0 3.18e-01 96.4% 45.0%
3712725 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 48.0 3.94e-01 100.0% 65.0%
3896769 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.57 47.0 3.42e-01 100.0% 71.4%
4030535 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 47.0 3.79e-01 100.0% 64.8%
3845491 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.54 44.0 3.61e-01 100.0% 82.5%
3472623 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.37e-01 100.0% 65.5%
3723451 11.1.8.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Ctag/Cox11 (Pfam 04442) › PF26283 0.51 36.0 3.09e-01 78.6% 66.7%
4526685 10.32.1.208 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Cleaved_Adhesin 0.51 37.0 2.80e-01 87.5% 43.3%
3242086 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.50 41.0 2.96e-01 94.6% 78.9%
3497315 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.50 39.0 3.30e-01 98.2% 84.2%
D3 medium residues 141-286
PDB
Domain cluster: rep: IMGVR_UViG_3300028624_000122-3300028624-Ga0302246_10043441__D43-160
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ethA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.55 18.0 2.73e-01 78.8% 67.7%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 20.0 2.75e-01 82.9% 66.2%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002641 209.1.2.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like 0.85 59.0 4.21e-01 97.9% 27.9%
5008200 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 26.0 3.69e-01 83.6% 100.0%
D4 medium residues 287-405_482-518
PDB
Domain cluster: rep: IMGVR_UViG_3300014039_000036-3300014039-Ga0116646_100011736__D139-186_242-366_472-484
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y1fX00 3.90.1580.10 Alpha Beta › Alpha-Beta Complex › paralog of FGE (formylglycine-generating enzyme) › paralog of FGE (formylglycine-generating enzyme) 0.73 69.0 5.61e-01 100.0% 83.5%
1f00I03 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.66 41.0 5.07e-01 99.4% 99.0%
1sb2B00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.56 40.0 4.50e-01 100.0% 92.7%
1fvuB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.56 40.0 4.51e-01 100.0% 94.2%
2kv3A00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.55 40.0 4.35e-01 92.9% 88.5%
1v7pB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.55 40.0 4.48e-01 100.0% 92.9%
4uwwA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.55 41.0 4.53e-01 100.0% 93.8%
3fd4A00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.53 37.0 3.91e-01 100.0% 80.0%
1c3aA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.52 40.0 4.32e-01 100.0% 91.9%
1egiA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.52 40.0 4.42e-01 100.0% 96.9%
1jznA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.52 41.0 4.38e-01 100.0% 94.8%
1gz2A00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 42.0 4.42e-01 100.0% 97.1%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002641 209.1.2.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like 0.95 92.0 6.65e-01 100.0% 72.1%
2080140 209.1.2.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase 0.85 82.0 5.90e-01 100.0% 81.4%
4102050 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.68 40.0 4.72e-01 99.4% 82.7%
4027320 209.1.1.20 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › PF26058 0.66 31.0 4.47e-01 100.0% 98.6%
None — 0.66 40.0 4.77e-01 100.0% 87.3%
4509116 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.65 41.0 4.78e-01 100.0% 89.9%
4589054 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.64 40.0 4.67e-01 100.0% 85.2%
3924892 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.57 41.0 4.62e-01 100.0% 95.8%
4468964 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.55 40.0 4.36e-01 100.0% 88.1%
4295490 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.54 39.0 3.96e-01 100.0% 74.1%
3226269 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.53 40.0 4.30e-01 100.0% 88.9%
4369968 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.53 41.0 4.28e-01 100.0% 85.5%
4442028 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.52 41.0 4.26e-01 100.0% 86.9%
1936539 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.52 37.0 3.58e-01 100.0% 63.8%
4509230 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.52 40.0 4.39e-01 100.0% 95.4%
4563435 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.52 41.0 4.30e-01 100.0% 90.0%
3859812 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.52 40.0 4.26e-01 99.4% 88.6%
4160139 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.52 41.0 4.29e-01 100.0% 88.9%
4379785 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.52 41.0 4.21e-01 100.0% 86.0%
4471932 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.52 40.0 4.28e-01 100.0% 90.0%
5029487 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.52 49.0 4.43e-01 100.0% 91.7%
3920343 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.52 42.0 4.32e-01 100.0% 88.0%
3997876 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.52 40.0 4.32e-01 100.0% 93.3%
3217731 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.51 42.0 4.30e-01 100.0% 88.0%
3919614 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.51 39.0 4.36e-01 100.0% 96.9%
3215762 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.51 40.0 4.29e-01 100.0% 94.1%
3211658 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.51 44.0 4.50e-01 100.0% 94.6%
3908631 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.51 41.0 4.39e-01 100.0% 96.3%
7333 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.51 42.0 4.42e-01 100.0% 97.1%
3223869 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.50 40.0 4.06e-01 100.0% 84.5%
D5 medium residues 406-481
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gs0A02 3.90.228.10 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.51 36.0 2.67e-01 75.0% 98.6%
1dglA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.17e-01 100.0% 86.5%