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NC_048859.1__YP_009857368.1__HWD15_gp08__00008

Bact-Vir

NC_048859.1__YP_009857368.1__HWD15_gp08__00008

Identity

Accession:
NC_048859 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-54
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jzaA03 1.20.120.1720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.77 69.0 4.79e-01 98.0% 39.2%
3eofB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.76 59.0 3.74e-01 84.0% 38.4%
1bkjA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.75 59.0 3.76e-01 84.0% 39.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3564521 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.81 51.0 3.24e-01 100.0% 15.2%
3530636 192.29.1.103 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TADA2A-like_3rd 0.81 66.0 5.47e-01 94.0% 51.8%
3917386 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.74 59.0 4.05e-01 88.0% 45.1%
3428856 1145.1.1.1 few secondary structure elements › nigellin-1.1 › nigellin-1.1 › nigellin-1.1 › Per1 0.71 62.0 4.89e-01 96.0% 64.0%
3708691 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.67 56.0 4.33e-01 92.0% 43.6%
4029955 4.1.1.85 beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.64 47.0 3.36e-01 78.0% 98.6%
3550844 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.62 50.0 3.45e-01 86.0% 36.3%