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NC_048861.1__YP_009857539.1__HWD17_gp107__00107

Bact-Vir

NC_048861.1__YP_009857539.1__HWD17_gp107__00107

Identity

Accession:
NC_048861 ↗
Kingdom:
phage

Quality

77.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Grimontviridae› Privateervirus› Proteus_phage_Privateer

TaxID: 2712958

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-89
PDB
Domain cluster: rep: NC_055910.1__YP_010113953.1__KNV68_gp068__00068__D27-87
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 63.0 4.90e-01 92.4% 42.1%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 66.0 6.42e-01 93.9% 88.9%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 61.0 6.26e-01 95.5% 91.9%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 64.0 6.24e-01 97.0% 87.5%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.73 66.0 4.98e-01 97.0% 84.2%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 61.0 5.85e-01 97.0% 81.6%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.71 63.0 4.80e-01 98.5% 60.9%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.71 60.0 6.16e-01 97.0% 98.4%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 55.0 5.65e-01 95.5% 90.3%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 46.0 5.16e-01 98.5% 97.9%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 5.46e-01 95.5% 93.1%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 50.0 5.12e-01 86.4% 87.1%
3pw3D00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 56.0 3.60e-01 100.0% 94.9%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.65 56.0 5.15e-01 100.0% 81.1%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 53.0 4.95e-01 95.5% 73.8%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 5.32e-01 97.0% 88.6%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.62 49.0 4.90e-01 98.5% 83.6%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 49.0 5.20e-01 90.9% 100.0%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.62 42.0 4.64e-01 80.3% 94.1%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 49.0 4.07e-01 86.4% 65.2%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 50.0 5.31e-01 93.9% 100.0%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.60 51.0 4.26e-01 100.0% 59.8%
2d5mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 51.0 3.74e-01 97.0% 82.0%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 50.0 3.85e-01 100.0% 96.5%
8djfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 48.0 3.16e-01 90.9% 50.7%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 41.0 4.33e-01 81.8% 84.7%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 46.0 4.73e-01 95.5% 95.1%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 47.0 4.55e-01 97.0% 81.3%
1kbaA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.58 38.0 3.88e-01 97.0% 68.2%
3ewkA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 39.0 3.37e-01 71.2% 45.8%
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 45.0 3.40e-01 86.4% 80.7%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.57 48.0 4.03e-01 97.0% 75.2%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 44.0 4.58e-01 95.5% 95.2%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 47.0 4.77e-01 98.5% 97.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 46.0 4.74e-01 95.5% 98.4%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.56 45.0 3.38e-01 90.9% 86.5%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 45.0 4.44e-01 98.5% 85.1%
1k5dB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 3.72e-01 100.0% 69.9%
2n99A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.55 38.0 3.64e-01 97.0% 63.2%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 4.00e-01 98.5% 91.8%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.54 44.0 3.57e-01 100.0% 89.0%
2p0hA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 3.90e-01 100.0% 89.8%
4g79A00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.53 44.0 3.62e-01 95.5% 83.6%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 43.0 3.77e-01 95.5% 66.1%
1kf6B01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.52 43.0 3.78e-01 93.9% 82.7%
1qqhA00 2.170.200.10 Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain 0.52 38.0 2.99e-01 78.8% 62.5%
2og9A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 44.0 3.50e-01 95.5% 91.5%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.51 39.0 3.18e-01 89.4% 41.7%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.50 41.0 3.25e-01 98.5% 77.8%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.50 39.0 2.65e-01 90.9% 63.0%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3507146 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.83 64.0 5.87e-01 93.9% 63.5%
3210653 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 57.0 5.76e-01 87.9% 76.9%
3434623 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.78 72.0 4.93e-01 100.0% 94.7%
3491615 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.78 62.0 4.11e-01 93.9% 22.8%
3495447 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.78 62.0 5.05e-01 93.9% 47.5%
3564972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 60.0 5.89e-01 95.5% 78.6%
3798312 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.76 65.0 6.38e-01 97.0% 87.1%
5017073 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.75 61.0 4.61e-01 97.0% 38.0%
4607738 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.73 63.0 5.35e-01 97.0% 63.6%
3935716 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.73 63.0 6.01e-01 97.0% 82.7%
3176265 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.73 64.0 4.81e-01 97.0% 43.2%
3588655 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.71 65.0 4.61e-01 100.0% 93.0%
3782050 4.18.1.1 ↗ beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.71 64.0 5.02e-01 98.5% 77.8%
3448327 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.71 61.0 6.04e-01 95.5% 92.9%
3550699 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.71 61.0 5.42e-01 95.5% 68.4%
3396897 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 61.0 6.23e-01 93.9% 96.8%
3549321 4.11.1.5 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.70 61.0 4.60e-01 97.0% 41.2%
4929262 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.70 60.0 4.55e-01 97.0% 40.6%
3736411 4.1.1.246 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.70 61.0 5.64e-01 100.0% 78.8%
3290706 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 60.0 6.16e-01 95.5% 96.8%
3373583 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 60.0 5.87e-01 93.9% 88.6%
3923766 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 59.0 4.87e-01 93.9% 71.3%
3815495 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 58.0 5.72e-01 95.5% 87.1%
5050716 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.69 61.0 4.76e-01 97.0% 51.1%
3585538 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.68 55.0 4.86e-01 95.5% 60.0%
3582876 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.68 55.0 4.79e-01 93.9% 57.1%
3879755 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.68 59.0 5.05e-01 97.0% 69.5%
3894729 4.1.1.461 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH 0.67 57.0 5.18e-01 97.0% 94.4%
3793962 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.67 55.0 5.03e-01 95.5% 67.8%
3441142 4.8.1.7 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SAWADEE 0.66 50.0 5.37e-01 84.8% 96.4%
4530545 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.66 56.0 5.05e-01 98.5% 92.6%
3238955 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.66 53.0 5.00e-01 95.5% 73.8%
2410381 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 56.0 5.29e-01 93.9% 83.5%
4114383 4.8.1.47 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › zf_CCCH_4 0.65 53.0 4.99e-01 93.9% 95.3%
4023315 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 56.0 5.14e-01 100.0% 75.6%
3212772 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 52.0 5.07e-01 95.5% 79.7%
5024617 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.64 56.0 4.97e-01 98.5% 75.8%
3427504 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.64 54.0 5.33e-01 97.0% 98.6%
3180573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 4.82e-01 98.5% 77.9%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.21e-01 98.5% 88.7%
3772106 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.62 49.0 3.38e-01 86.4% 39.6%
3545090 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.62 48.0 3.40e-01 86.4% 40.5%
3886646 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 50.0 5.04e-01 95.5% 89.2%
4952973 4.15.1.0 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like 0.62 52.0 4.81e-01 98.5% 83.3%
3970000 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.65e-01 100.0% 69.0%
3914346 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 50.0 4.52e-01 95.5% 65.6%
3636807 1.1.5.30 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.61 49.0 3.22e-01 87.9% 79.3%
3912726 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 51.0 5.08e-01 92.4% 88.6%
3995290 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.61 52.0 4.48e-01 98.5% 83.6%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.60 49.0 5.01e-01 95.5% 95.4%
4960051 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.60 45.0 3.47e-01 84.8% 49.4%
7380 219.1.1.34 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 0.60 50.0 3.85e-01 100.0% 96.5%
3491784 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.59 51.0 4.21e-01 100.0% 76.8%
3659579 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 53.0 5.08e-01 100.0% 90.7%
5034832 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.77e-01 95.5% 92.9%
3885695 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 45.0 4.30e-01 97.0% 72.5%
3187444 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.58 49.0 4.14e-01 97.0% 58.3%
3688114 5.1.4.100 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.58 45.0 2.70e-01 86.4% 47.6%
3399284 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 46.0 4.66e-01 97.0% 90.8%
3417443 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 45.0 4.47e-01 97.0% 84.1%
4019925 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 45.0 4.47e-01 97.0% 82.9%
3397439 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 50.0 4.10e-01 98.5% 85.6%
3771406 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 50.0 4.10e-01 100.0% 87.2%
3907176 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.56 47.0 4.37e-01 100.0% 77.8%
3412900 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 48.0 4.09e-01 100.0% 89.6%
531 4.1.1.281 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_KALRN 0.56 45.0 4.44e-01 98.5% 85.1%
3936054 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.55 46.0 4.01e-01 98.5% 84.5%
3933227 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 3.95e-01 100.0% 79.1%
3597380 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 3.81e-01 97.0% 81.7%
3170649 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 45.0 4.24e-01 97.0% 88.2%
3391330 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.54 45.0 3.81e-01 98.5% 78.3%
3619598 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 44.0 4.16e-01 95.5% 89.4%
4936008 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.53 45.0 4.01e-01 93.9% 73.7%
3593275 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 44.0 3.83e-01 98.5% 82.7%
3781471 220.1.1.169 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_26 0.52 42.0 3.27e-01 98.5% 70.3%
3624228 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 43.0 4.19e-01 100.0% 100.0%
5053095 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.75e-01 100.0% 70.4%
3596842 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.60e-01 98.5% 72.5%
3094739 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.51 42.0 3.41e-01 97.0% 65.0%
3786978 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 43.0 4.31e-01 98.5% 98.6%