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NC_048864.1__YP_009857686.1__HWD20_gp26__00026

Bact-Vir

NC_048864.1__YP_009857686.1__HWD20_gp26__00026

Identity

Accession:
NC_048864 ↗
Kingdom:
phage

Quality

70.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-78
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kumA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.73 52.0 5.68e-01 100.0% 93.0%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 62.0 5.37e-01 98.6% 61.5%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 51.0 5.24e-01 91.5% 83.3%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 59.0 5.33e-01 100.0% 69.7%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 49.0 5.01e-01 88.7% 80.6%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 56.0 5.26e-01 94.4% 74.7%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 47.0 4.97e-01 91.5% 83.6%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 58.0 5.02e-01 100.0% 80.0%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 59.0 5.39e-01 98.6% 98.9%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 58.0 5.13e-01 95.8% 69.9%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 58.0 5.09e-01 100.0% 68.8%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 54.0 5.09e-01 100.0% 73.3%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 58.0 5.20e-01 100.0% 70.0%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.66 56.0 4.77e-01 95.8% 64.1%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.65 56.0 5.02e-01 98.6% 68.3%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 56.0 4.93e-01 100.0% 68.2%
4gzuA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 56.0 4.45e-01 100.0% 49.3%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 49.0 5.10e-01 94.4% 90.9%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 56.0 5.33e-01 100.0% 86.7%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 53.0 4.65e-01 95.8% 68.2%
1rpyB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 42.0 3.99e-01 70.4% 68.6%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 53.0 4.27e-01 100.0% 82.6%
4l5tB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 40.0 3.75e-01 78.9% 52.7%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 43.0 4.43e-01 91.5% 79.1%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 45.0 4.55e-01 94.4% 80.8%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 51.0 4.46e-01 100.0% 82.5%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.01e-01 73.2% 96.2%
5i4dA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 41.0 4.04e-01 73.2% 100.0%
3aqoA02 3.30.1360.200 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.58 51.0 4.12e-01 98.6% 98.6%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 44.0 4.10e-01 81.7% 96.7%
3b77A01 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.58 41.0 3.77e-01 76.1% 57.0%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.58 47.0 4.68e-01 94.4% 94.7%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.57 47.0 4.49e-01 100.0% 77.8%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 44.0 4.33e-01 97.2% 80.3%
3f7wA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 34.0 3.20e-01 83.1% 47.3%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 34.0 3.80e-01 90.1% 91.5%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 37.0 3.32e-01 70.4% 84.6%
4r0mB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.54 40.0 2.50e-01 80.3% 58.1%
5kvsA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 37.0 2.84e-01 71.8% 34.6%
3frnA01 3.10.129.70 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.54 38.0 3.20e-01 77.5% 90.6%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 38.0 3.36e-01 84.5% 51.4%
1mk1A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 45.0 3.33e-01 98.6% 63.1%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 3.93e-01 91.5% 85.9%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 34.0 3.54e-01 84.5% 74.6%
3f1jA00 2.70.20.40 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Borna disease virus, matrix protein 0.50 38.0 3.16e-01 84.5% 82.1%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3704939 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.80 71.0 6.61e-01 100.0% 84.4%
3252105 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.76 63.0 5.43e-01 97.2% 58.2%
3249490 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.74 66.0 5.62e-01 100.0% 60.9%
3253063 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.74 64.0 5.40e-01 94.4% 61.7%
3591463 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.74 65.0 5.60e-01 100.0% 63.5%
3570692 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.74 67.0 5.66e-01 100.0% 62.6%
4304407 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.73 66.0 5.32e-01 100.0% 59.3%
4012071 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 65.0 4.04e-01 100.0% 18.7%
4962459 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 64.0 5.99e-01 97.2% 88.6%
3899369 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.73 65.0 5.07e-01 100.0% 46.7%
4407986 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.73 65.0 5.20e-01 98.6% 54.7%
4979972 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 66.0 5.31e-01 100.0% 52.6%
3245139 220.1.1.28 beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.73 64.0 5.01e-01 100.0% 59.4%
3531579 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.73 64.0 4.98e-01 100.0% 45.2%
3699518 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.73 64.0 5.34e-01 100.0% 57.6%
3595376 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 62.0 4.75e-01 100.0% 41.9%
3167811 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.72 65.0 5.24e-01 100.0% 60.0%
4214812 4.8.1.26 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › bPH_8 0.72 65.0 6.08e-01 100.0% 88.6%
3788477 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 65.0 5.48e-01 100.0% 68.7%
3269549 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 64.0 4.93e-01 100.0% 65.8%
3263647 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 61.0 5.15e-01 97.2% 60.0%
4998413 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 56.0 5.72e-01 95.8% 88.6%
3631248 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.70 63.0 5.24e-01 100.0% 75.2%
4383747 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.70 63.0 4.85e-01 100.0% 47.1%
3924235 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.70 61.0 4.44e-01 100.0% 39.5%
3913573 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.69 62.0 5.21e-01 100.0% 68.3%
665 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.69 50.0 5.13e-01 90.1% 80.6%
3574847 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.69 62.0 4.91e-01 100.0% 65.5%
3252821 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 58.0 5.02e-01 100.0% 60.0%
3785371 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.69 60.0 4.91e-01 100.0% 56.3%
3171728 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.69 59.0 4.78e-01 100.0% 51.7%
3563547 220.1.1.27 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.68 59.0 4.94e-01 97.2% 59.2%
3743110 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.68 56.0 4.95e-01 97.2% 61.0%
3276218 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.68 61.0 5.04e-01 100.0% 80.0%
3912274 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.68 51.0 5.20e-01 94.4% 82.9%
3411942 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.68 60.0 4.94e-01 100.0% 54.6%
3887159 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.68 53.0 5.51e-01 93.0% 92.3%
3255344 220.1.1.27 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.68 59.0 4.97e-01 97.2% 62.5%
3743938 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 61.0 4.97e-01 100.0% 54.6%
3889621 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.68 48.0 5.14e-01 90.1% 88.3%
3931704 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.68 60.0 5.22e-01 100.0% 70.9%
3496371 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 59.0 4.74e-01 100.0% 56.6%
3880422 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.68 51.0 5.22e-01 93.0% 85.3%
3627615 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.67 58.0 4.66e-01 100.0% 48.3%
5074664 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 59.0 4.73e-01 100.0% 50.0%
3801512 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 58.0 4.92e-01 100.0% 58.3%
3222570 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 58.0 4.99e-01 98.6% 66.1%
4137634 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 58.0 5.28e-01 97.2% 75.8%
4943079 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 58.0 4.59e-01 100.0% 47.7%
3626366 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 58.0 5.08e-01 100.0% 71.8%
3896688 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.66 48.0 5.17e-01 90.1% 91.7%
3175878 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 57.0 4.52e-01 100.0% 45.2%
3742330 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.66 57.0 4.96e-01 100.0% 63.5%
3540167 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 59.0 4.79e-01 100.0% 71.1%
3211867 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 57.0 4.99e-01 98.6% 66.4%
2712015 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.66 52.0 4.97e-01 91.5% 74.1%
3926425 220.1.1.158 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.66 57.0 5.13e-01 98.6% 71.0%
3939988 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 60.0 4.92e-01 100.0% 60.0%
3744190 220.1.1.43 beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.66 57.0 4.87e-01 100.0% 65.0%
3625334 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 58.0 4.47e-01 100.0% 52.5%
3533574 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 57.0 4.59e-01 100.0% 51.7%
4926953 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 57.0 4.88e-01 97.2% 63.2%
3750640 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.65 57.0 4.96e-01 100.0% 65.5%
3237220 220.1.1.84 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.65 51.0 4.44e-01 88.7% 63.5%
3582821 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.65 57.0 5.33e-01 100.0% 81.1%
4999602 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 52.0 4.67e-01 85.9% 65.3%
3398379 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 56.0 4.78e-01 100.0% 59.2%
3191989 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.64 57.0 4.52e-01 100.0% 49.7%
3405822 220.1.1.43 beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.64 55.0 4.47e-01 100.0% 55.9%
4018795 220.1.1.43 beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.64 56.0 4.70e-01 100.0% 61.3%
3637683 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 56.0 4.13e-01 100.0% 56.4%
3623534 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 56.0 5.20e-01 100.0% 84.4%
1177137 220.1.1.43 beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.63 54.0 4.92e-01 100.0% 73.0%
3750184 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.62 48.0 4.79e-01 90.1% 78.7%
136515 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.59 41.0 4.18e-01 85.9% 75.0%
3787887 896.1.1.2 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.56 48.0 4.79e-01 98.6% 94.5%
3290045 300.1.1.12 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DUF5753 0.54 36.0 2.77e-01 70.4% 26.7%
4011470 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 40.0 2.64e-01 85.9% 47.3%
3978756 3197.1.1.1 a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N 0.52 43.0 3.68e-01 93.0% 80.8%
3408937 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.52 37.0 3.63e-01 84.5% 67.5%
3303112 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.52 37.0 3.23e-01 76.1% 60.0%
3935244 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 41.0 2.73e-01 90.1% 50.9%
3698212 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 43.0 2.76e-01 94.4% 84.9%