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NC_048870.1__YP_009858642.1__HWD26_gp165__00101

Bact-Vir

NC_048870.1__YP_009858642.1__HWD26_gp165__00101

Identity

Accession:
NC_048870 ↗
Kingdom:
phage

Quality

81.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-55
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6mgiA03 1.20.1440.90 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Phosphoenolpyruvate/pyruvate domain 0.66 52.0 3.97e-01 89.1% 65.0%
3c6vA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.60 50.0 3.84e-01 100.0% 61.5%
3qxbA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.56 50.0 3.12e-01 100.0% 29.3%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3795433 230.5.1.1 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.86 74.0 5.51e-01 100.0% 39.2%
1190412 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.70 54.0 4.61e-01 87.3% 57.9%
5020835 205.1.1.0 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.68 58.0 3.86e-01 100.0% 95.5%
3693837 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.65 56.0 3.47e-01 100.0% 54.7%
4375847 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.64 46.0 3.87e-01 74.5% 90.0%
4540264 504.1.1.1 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB 0.62 52.0 3.91e-01 100.0% 42.0%
4037556 504.1.1.1 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB 0.62 51.0 3.91e-01 98.2% 87.9%
3975444 301.8.1.2 a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › 4PPT_N 0.53 43.0 3.62e-01 89.1% 67.4%
D2 medium residues 56-152
PDB
Domain cluster: representative