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NC_048871.1__YP_009858731.1__HWD27_gp023__00023
Bact-VirNC_048871.1__YP_009858731.1__HWD27_gp023__00023
Identity
- Accession:
- NC_048871 ↗
- Kingdom:
- phage
Quality
64.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Demerecviridae›
Epseptimavirus›
Salmonella_phage_oselot
TaxID: 2713309
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-63
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21393.3 best | Phage_pb10_N | 114.8 | 2.50e-33 | 95.0% | 96.6% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1v66A00 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.63 | 47.0 | 4.59e-01 | 91.7% | 73.8% |
| 1jeqA05 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.62 | 46.0 | 4.91e-01 | 98.3% | 96.1% |
| 2riqA01 | 1.10.20.130 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.61 | 44.0 | 4.28e-01 | 85.0% | 71.2% |
| 1zbuB01 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.60 | 48.0 | 4.57e-01 | 100.0% | 73.0% |
| 4dooA02 | 1.10.890.20 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › | 0.57 | 44.0 | 4.57e-01 | 98.3% | 96.3% |
| 1o5wA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 43.0 | 3.06e-01 | 86.7% | 89.8% |
| 6nmnA02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.52 | 45.0 | 3.62e-01 | 100.0% | 75.8% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3242754 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.68 | 48.0 | 5.45e-01 | 96.7% | 100.0% |
| 4025253 | 297.1.1.2 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Sua5_yciO_yrdC | 0.67 | 50.0 | 3.23e-01 | 80.0% | 56.0% |
| 2070854 | 130.3.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › Decoration protein pb10 N-terminal domain › Decoration protein pb10 N-terminal domain › Phage_pb10_N | 0.67 | 58.0 | 5.33e-01 | 100.0% | 78.8% |
| 3925195 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.63 | 47.0 | 4.58e-01 | 93.3% | 73.8% |
| 4174826 | 102.2.1.1 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › RrnaAD | 0.55 | 39.0 | 3.84e-01 | 100.0% | 72.3% |
| 4154354 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.55 | 38.0 | 3.82e-01 | 100.0% | 72.3% |
| 4987475 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 35.0 | 3.43e-01 | 100.0% | 66.2% |