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NC_048873.1__YP_009859063.1__HWD29_gp017__00017
Bact-VirNC_048873.1__YP_009859063.1__HWD29_gp017__00017
Identity
- Accession:
- NC_048873 ↗
- Kingdom:
- phage
Quality
77.4
mean pLDDT
Taxonomy
TaxID: 2847815
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-18_24-67
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r7jA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 53.0 | 4.40e-01 | 73.6% | 46.7% |
| 2p8tA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 53.0 | 4.76e-01 | 86.8% | 90.7% |
| 1twcA01 | 4.10.860.120 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › RNA polymerase II, clamp domain | 0.66 | 50.0 | 3.72e-01 | 81.1% | 72.7% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.65 | 58.0 | 3.44e-01 | 100.0% | 24.9% |
| 3lupA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 52.0 | 3.81e-01 | 98.1% | 98.7% |
| 2hroA03 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.61 | 55.0 | 3.32e-01 | 100.0% | 27.6% |
| 3iqtA01 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.60 | 52.0 | 4.11e-01 | 100.0% | 51.8% |
| 2ahmG01 | 6.10.250.2820 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 44.0 | 3.52e-01 | 79.2% | 45.5% |
| 1r4gA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.59 | 47.0 | 4.73e-01 | 98.1% | 94.3% |
| 2wtbA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.57 | 46.0 | 2.99e-01 | 100.0% | 43.3% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3742738 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.89 | 70.0 | 5.19e-01 | 84.9% | 44.8% |
| 3936170 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.79 | 64.0 | 4.58e-01 | 86.8% | 40.0% |
| 4449311 | 101.1.1.61 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_AsnC-type | 0.73 | 55.0 | 5.89e-01 | 86.8% | 95.6% |
| 3487002 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.69 | 53.0 | 3.23e-01 | 83.0% | 82.0% |
| 4386055 | 2005.1.1.47 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans | 0.69 | 49.0 | 3.14e-01 | 75.5% | 36.9% |
| 3293738 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.69 | 52.0 | 3.11e-01 | 81.1% | 84.3% |
| 4932731 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.68 | 51.0 | 3.21e-01 | 81.1% | 81.0% |
| 4023558 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.68 | 51.0 | 3.10e-01 | 81.1% | 86.4% |
| 4380798 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.67 | 51.0 | 3.12e-01 | 81.1% | 82.5% |
| 5026630 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.67 | 51.0 | 3.14e-01 | 83.0% | 80.9% |
| 3186602 | 5050.1.1.63 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › TRI12, MFS_1 | 0.66 | 57.0 | 3.22e-01 | 94.3% | 31.5% |
| 5042947 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.64 | 43.0 | 4.44e-01 | 73.6% | 74.0% |
| 4077811 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.64 | 51.0 | 4.64e-01 | 92.5% | 86.7% |
| 3587277 | 2010.1.1.3 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man | 0.62 | 51.0 | 3.95e-01 | 98.1% | 93.8% |
| 4224437 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.62 | 46.0 | 4.22e-01 | 86.8% | 60.0% |
| 4366692 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.61 | 52.0 | 4.62e-01 | 100.0% | 97.5% |
| 4605981 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.61 | 48.0 | 4.45e-01 | 88.7% | 95.7% |
| 4051477 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.60 | 50.0 | 3.84e-01 | 100.0% | 63.0% |
| 5054165 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 51.0 | 3.40e-01 | 100.0% | 32.3% |
| 3592841 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.56 | 48.0 | 4.40e-01 | 100.0% | 85.7% |
| 4649569 | 101.45.1.2 ↗ | alpha arrays › HTH › DNA polymerase II large subunit DP2 helical domain › DNA polymerase II large subunit DP2 helical domain › PolC_DP2_cat | 0.54 | 45.0 | 3.39e-01 | 100.0% | 37.9% |
| 3888185 | 103.1.1.52 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_N4BP1_C | 0.51 | 39.0 | 3.98e-01 | 84.9% | 90.0% |
| 2767750 | 101.1.4.8 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CP76 | 0.51 | 35.0 | 3.14e-01 | 100.0% | 47.6% |