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NC_048873.1__YP_009859250.1__HWD29_gp138__00204

Bact-Vir

NC_048873.1__YP_009859250.1__HWD29_gp138__00204

Identity

Accession:
NC_048873 ↗
Kingdom:
phage

Quality

94.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mydovirus› Klebsiella_phage_KpS8

TaxID: 2847815

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-96
PDB
Domain cluster: rep: NC_049851.1__YP_009904383.1__H1O17_gp005__00005__D41-105
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6rarI01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.64 55.0 4.00e-01 100.0% 45.1%
1s68A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.62 55.0 4.59e-01 100.0% 82.3%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 33.0 3.59e-01 100.0% 62.5%
3l2pA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.59 51.0 4.20e-01 98.5% 77.5%
3lnbA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.58 49.0 3.40e-01 100.0% 84.5%
2hivA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.57 49.0 3.50e-01 100.0% 47.1%
1vs0A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.57 49.0 4.17e-01 100.0% 77.3%
3vnnA00 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.57 49.0 4.03e-01 100.0% 69.4%
1xk5A01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.56 49.0 3.54e-01 100.0% 35.7%
2cfmA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.56 49.0 3.50e-01 100.0% 48.3%
1w4tA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.56 48.0 3.58e-01 100.0% 77.0%
1auvA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 49.0 4.20e-01 100.0% 64.8%
2crhA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 35.0 2.97e-01 100.0% 41.2%
1kblA06 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 44.0 3.99e-01 96.9% 89.8%
2pvpA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 46.0 3.63e-01 98.5% 63.0%
5i47B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 46.0 4.13e-01 100.0% 74.7%
2pn1A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 46.0 3.88e-01 100.0% 67.5%
2olsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 43.0 3.47e-01 95.4% 95.1%
3t7aA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 45.0 3.24e-01 100.0% 41.6%
7xoiD01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 33.0 2.78e-01 98.5% 39.3%
4fflA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 42.0 2.95e-01 98.5% 31.3%
1tkeA03 3.30.54.20 Alpha Beta › 2-Layer Sandwich › Replication Terminator Protein; Chain A, domain 2 › 0.51 36.0 3.81e-01 87.7% 84.5%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 41.0 3.05e-01 95.4% 100.0%
1uc8A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 44.0 3.93e-01 100.0% 69.1%
6etzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.42e-01 98.5% 60.7%
2qecA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 40.0 2.94e-01 87.7% 65.0%
6muwK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 43.0 3.14e-01 98.5% 65.1%
6qm7K00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.50 41.0 3.01e-01 96.9% 99.0%
1sz2A02 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.50 40.0 3.01e-01 96.9% 85.5%
2a22B00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.50 38.0 2.78e-01 84.6% 91.6%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3929033 59.1.1.0 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.62 31.0 2.92e-01 98.5% 36.3%
1171971 66.1.1.3 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox 0.62 32.0 3.83e-01 100.0% 76.2%
3581071 4095.1.1.2 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_M+DNA_ligase_A_N 0.60 52.0 3.20e-01 100.0% 22.1%
5024218 206.1.3.23 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase 0.60 52.0 3.34e-01 100.0% 80.6%
3799247 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.59 52.0 3.49e-01 100.0% 36.2%
3795817 206.1.3.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.59 51.0 3.44e-01 100.0% 35.5%
3274214 859.1.1.1 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.57 42.0 3.17e-01 84.6% 43.9%
3288874 206.1.3.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.56 46.0 3.40e-01 98.5% 43.6%
3737433 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.54 47.0 3.17e-01 100.0% 33.3%
2439627 206.1.3.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.54 42.0 3.77e-01 87.7% 59.6%
3505024 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.53 44.0 2.98e-01 95.4% 92.7%
3787619 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.53 47.0 3.92e-01 100.0% 72.2%
5062096 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.53 46.0 3.13e-01 100.0% 28.5%
5051783 206.1.3.3 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.52 42.0 2.82e-01 95.4% 39.4%
2521302 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.51 43.0 3.17e-01 98.5% 65.1%
5052715 268.1.1.0 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.51 35.0 2.91e-01 73.8% 85.4%
3555063 3009.1.1.1 ↗ alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › DSBA 0.51 41.0 2.98e-01 95.4% 95.5%
4931355 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.51 37.0 3.27e-01 83.1% 93.6%
3238522 2008.1.1.27 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.51 43.0 2.86e-01 100.0% 65.1%
5053864 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.51 41.0 3.14e-01 96.9% 38.3%
4973990 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.51 41.0 2.78e-01 100.0% 40.3%
3903560 220.1.1.85 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID_2 0.50 38.0 3.02e-01 95.4% 38.6%