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NC_049340.1__YP_009873726.1__HYO65_gp042__00042

Bact-Vir

NC_049340.1__YP_009873726.1__HYO65_gp042__00042

Identity

Accession:
NC_049340 ↗
Kingdom:
phage

Quality

62.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shirahamavirus› Tenacibaculum_phage_PTm1

TaxID: 2547425

Cluster

View cluster (33 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-82_112-199
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.79 62.0 6.81e-01 98.1% 100.0%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.76 45.0 5.73e-01 98.8% 98.0%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.73 57.0 6.17e-01 99.4% 97.1%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.70 66.0 5.95e-01 100.0% 81.4%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.69 52.0 5.80e-01 98.8% 100.0%
6sulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 36.0 4.30e-01 74.1% 75.0%
2bi0A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 32.0 3.35e-01 100.0% 55.1%
1s9cC01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 31.0 3.30e-01 100.0% 53.8%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.56 26.0 3.40e-01 73.5% 80.0%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 42.0 4.51e-01 98.8% 91.5%
1lo7A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 31.0 3.36e-01 100.0% 62.9%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 37.0 3.80e-01 96.3% 71.1%
3nrfA00 2.60.40.4110 Mainly Beta › Sandwich › Immunoglobulin-like › Protein of unknown function DUF4354 0.54 30.0 3.68e-01 84.0% 85.3%
3kh8B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 29.0 3.05e-01 99.4% 54.5%
1ju2A02 3.30.410.40 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › 0.52 43.0 4.17e-01 87.0% 98.3%
2l8yA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.52 29.0 3.46e-01 92.0% 81.0%
3ejjX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 31.0 3.97e-01 83.3% 100.0%
3wirA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.51 46.0 3.98e-01 100.0% 89.0%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004177 304.124.1.3 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 0.83 63.0 7.08e-01 98.8% 100.0%
4997777 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.75 35.0 4.86e-01 90.7% 85.9%
4627501 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.75 36.0 4.63e-01 73.5% 77.7%
5012467 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.75 35.0 4.25e-01 95.1% 65.5%
3589225 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.73 59.0 6.39e-01 99.4% 100.0%
5040945 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.73 62.0 6.43e-01 100.0% 96.7%
4888780 304.124.1.5 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › T4-gp15_tss 0.72 69.0 5.97e-01 100.0% 82.1%
3585212 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.72 68.0 6.09e-01 100.0% 91.6%
3164985 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.70 38.0 3.89e-01 97.5% 53.1%
3587074 1.1.13.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N 0.64 43.0 5.05e-01 96.3% 98.2%
3937491 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 39.0 4.23e-01 77.8% 71.9%
3960870 222.1.1.9 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.63 33.0 3.42e-01 99.4% 50.6%
5071182 222.1.1.1 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.63 31.0 3.38e-01 99.4% 54.9%
3181792 331.3.1.6 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.62 45.0 4.22e-01 74.7% 79.5%
3632540 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.61 44.0 4.18e-01 75.3% 87.7%
3713198 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.59 37.0 3.84e-01 76.5% 66.5%
5020942 7503.1.1.0 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.58 41.0 4.04e-01 99.4% 67.6%
4012171 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.58 42.0 3.70e-01 74.7% 88.2%
5013685 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 37.0 4.51e-01 83.3% 100.0%
3822349 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.57 42.0 3.74e-01 76.5% 73.2%
3840563 11.1.1.67 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF525 0.57 41.0 4.05e-01 81.5% 70.0%
5009503 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.57 41.0 4.42e-01 98.8% 87.1%
3303879 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.56 41.0 3.66e-01 76.5% 70.0%
4000485 319.1.1.20 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › SF3A2 0.55 33.0 4.00e-01 85.2% 89.1%
3547494 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.55 29.0 3.40e-01 82.7% 70.8%
4132858 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.54 34.0 4.15e-01 84.6% 98.1%
5025924 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.53 34.0 3.78e-01 98.8% 84.2%
3255190 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 33.0 3.92e-01 94.4% 99.0%
3189356 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.51 46.0 4.18e-01 98.1% 93.0%
1144292 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.51 46.0 3.99e-01 100.0% 89.4%
5063878 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.51 46.0 3.74e-01 99.4% 77.0%
3757392 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.50 45.0 3.69e-01 98.1% 86.3%
D2 medium residues 83-111_200-232
PDB