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NC_049340.1__YP_009873749.1__HYO65_gp065__00065

Bact-Vir

NC_049340.1__YP_009873749.1__HYO65_gp065__00065

Identity

Accession:
NC_049340 ↗
Kingdom:
phage

Quality

73.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shirahamavirus› Tenacibaculum_phage_PTm1

TaxID: 2547425

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 89-179
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nkgA02 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.66 37.0 3.85e-01 100.0% 58.8%
2hp7A00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.57 44.0 3.58e-01 83.5% 65.4%
7dm9A01 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.56 43.0 3.62e-01 83.5% 68.7%
2qz5A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 43.0 3.62e-01 100.0% 50.7%
2b3rA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 41.0 3.68e-01 100.0% 58.1%
3bgyA00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.53 48.0 3.59e-01 98.9% 57.5%
2b5iB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.76e-01 100.0% 73.4%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.51 25.0 3.02e-01 100.0% 70.2%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 40.0 3.09e-01 84.6% 94.2%
6kxkG01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 41.0 3.66e-01 100.0% 60.9%
3t8qB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 44.0 4.15e-01 98.9% 86.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5034575 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 37.0 3.85e-01 98.9% 60.0%
3788749 6109.1.1.0 ↗ a+b two layers › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 0.63 46.0 3.85e-01 100.0% 46.0%
5076469 243.6.1.5 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › UPF0113_N 0.63 36.0 3.59e-01 86.8% 53.7%
5034335 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.60 35.0 3.64e-01 98.9% 61.2%
3510782 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.59 40.0 3.61e-01 100.0% 50.4%
3419015 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 31.0 3.95e-01 84.6% 94.0%
5016319 866.1.1.2 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC 0.57 45.0 3.50e-01 83.5% 69.0%
3613865 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.52 38.0 3.21e-01 78.0% 95.8%
5020424 866.1.1.0 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like 0.52 39.0 3.11e-01 82.4% 61.9%
138029 304.6.1.4 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › Chol_subst-bind 0.51 40.0 2.84e-01 89.0% 58.2%
D2 medium residues 8-84
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10263.16 best SprT-like 38.2 1.50e-09 89.6% 52.3%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2db7A01 6.10.250.980 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.64 40.0 4.67e-01 75.3% 90.6%
5tk8A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.60 49.0 3.72e-01 90.9% 58.1%
5fbhA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 46.0 3.16e-01 84.4% 74.0%
1y8aA02 1.10.3870.10 Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily 0.56 40.0 3.59e-01 76.6% 92.2%
1x4oA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.53 35.0 3.52e-01 81.8% 66.7%
2fzlA02 6.10.140.1180 Special › Helix non-globular › Helix Hairpins › 0.53 39.0 4.24e-01 77.9% 100.0%
1httA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 39.0 2.67e-01 77.9% 94.8%
8hi4A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 38.0 2.77e-01 81.8% 99.6%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.51 30.0 3.42e-01 76.6% 81.8%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3485197 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.80 70.0 5.46e-01 94.8% 48.1%
3270701 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.80 68.0 5.76e-01 92.2% 57.6%
4271716 101.28.1.1 ↗ alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins › FlhC 0.69 49.0 4.76e-01 74.0% 74.1%
4982078 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.61 41.0 2.83e-01 70.1% 60.3%
4495479 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.61 48.0 4.55e-01 85.7% 100.0%
3955295 2007.1.19.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin 0.60 54.0 3.20e-01 100.0% 97.3%
3664503 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.60 44.0 4.56e-01 76.6% 97.1%
3728766 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.58 46.0 3.78e-01 87.0% 52.7%
3454921 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.53 41.0 3.13e-01 88.3% 34.6%
3758790 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.50 40.0 3.35e-01 85.7% 66.7%