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NC_049340.1__YP_009873755.1__HYO65_gp071__00071

Bact-Vir

NC_049340.1__YP_009873755.1__HYO65_gp071__00071

Identity

Accession:
NC_049340 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shirahamavirus› Tenacibaculum_phage_PTm1

TaxID: 2547425

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 25-81
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27459.1 best YoqU 63.9 2.40e-17 100.0% 38.1%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zx3A01 1.10.287.1020 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › NE0241-like 0.62 42.0 3.67e-01 70.2% 83.5%
1jm7A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 42.0 3.49e-01 75.4% 96.1%
6j7xA01 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.59 48.0 3.18e-01 98.2% 26.2%
3lyeA00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.58 49.0 3.19e-01 100.0% 71.9%
1o4xA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 42.0 4.37e-01 91.2% 88.9%
4eswA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 45.0 3.02e-01 94.7% 64.9%
6yetA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 40.0 3.47e-01 87.7% 52.7%
2b3yA02 3.40.1060.10 Alpha Beta › 3-Layer(aba) Sandwich › Aconitase; Domain 2 › Aconitase, Domain 2 0.52 44.0 3.41e-01 98.2% 43.0%
2j66A02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.51 43.0 2.90e-01 100.0% 25.5%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4997575 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.63 51.0 5.19e-01 93.0% 90.9%
3677741 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.63 51.0 3.94e-01 98.2% 38.6%
4979349 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 46.0 4.61e-01 93.0% 76.7%
5035604 327.6.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P 0.61 47.0 3.76e-01 84.2% 87.6%
4535037 3754.1.1.1 ↗ alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 0.58 46.0 2.99e-01 91.2% 58.0%
4472113 3754.1.1.1 ↗ alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 0.57 44.0 2.78e-01 86.0% 27.3%
4406277 3754.1.1.1 ↗ alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 0.57 48.0 3.08e-01 96.5% 19.0%
3953502 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.57 40.0 3.50e-01 75.4% 93.3%
4931573 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 4.49e-01 87.7% 90.0%
3242401 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 3.90e-01 93.0% 54.7%
3600997 109.30.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin Nup84/Nup107 › Nucleoporin Nup84/Nup107 0.55 40.0 2.63e-01 93.0% 15.9%
3798242 188.1.1.0 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain 0.55 45.0 3.08e-01 96.5% 40.4%
4529152 3754.1.1.1 ↗ alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 0.55 47.0 2.99e-01 100.0% 44.8%
4996303 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 46.0 4.44e-01 93.0% 83.1%
3936891 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 3.66e-01 89.5% 75.8%
4672682 101.1.2.27 ↗ alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.53 46.0 3.86e-01 100.0% 56.0%
3938065 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 45.0 4.07e-01 93.0% 69.3%
4047530 3754.1.1.1 ↗ alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 0.53 47.0 2.86e-01 100.0% 73.4%
4555056 141.1.1.6 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › HEPPP_synt_1 0.53 43.0 3.04e-01 96.5% 32.9%
5022012 101.1.2.491 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_BREX_BrxC 0.52 43.0 3.79e-01 96.5% 96.7%
4530564 3754.1.1.2 ↗ alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4,MraY_sig1 0.51 43.0 2.72e-01 96.5% 65.8%
4289604 3754.1.1.1 ↗ alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 0.50 41.0 2.66e-01 100.0% 69.1%
5081319 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 41.0 3.79e-01 93.0% 86.7%