←Back to structures
NC_049340.1__YP_009873765.1__HYO65_gp081__00081
Bact-VirNC_049340.1__YP_009873765.1__HYO65_gp081__00081
Identity
- Accession:
- NC_049340 ↗
- Kingdom:
- phage
Quality
93.9
mean pLDDT
Taxonomy
TaxID: 2547425
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-52
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fzlA01 | 1.10.150.790 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.76 | 52.0 | 4.33e-01 | 71.2% | 63.2% |
| 3l6gA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.76 | 53.0 | 3.73e-01 | 73.1% | 88.0% |
| 1wh4A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.61 | 49.0 | 4.12e-01 | 92.3% | 69.1% |
| 5zr4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 43.0 | 3.46e-01 | 80.8% | 39.2% |
| 1sxjD03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.59 | 50.0 | 4.28e-01 | 100.0% | 80.2% |
| 2uvfB02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.59 | 52.0 | 3.03e-01 | 98.1% | 27.3% |
| 1cy5A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.58 | 49.0 | 4.17e-01 | 100.0% | 60.9% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.58 | 40.0 | 3.94e-01 | 71.2% | 78.2% |
| 3rc3A02 | 1.20.272.40 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.57 | 32.0 | 2.76e-01 | 98.1% | 31.0% |
| 2lwdA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.57 | 45.0 | 3.91e-01 | 98.1% | 56.2% |
| 2zcuA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.56 | 40.0 | 3.10e-01 | 76.9% | 80.9% |
| 2plrA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 40.0 | 2.74e-01 | 96.2% | 19.8% |
| 4kjmB01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.55 | 44.0 | 4.18e-01 | 88.5% | 92.1% |
| 2ntxA01 | 1.20.58.2010 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 | 0.54 | 43.0 | 2.89e-01 | 88.5% | 72.4% |
| 2gh1A02 | 1.10.150.350 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.53 | 49.0 | 3.77e-01 | 100.0% | 71.3% |
| 6vvoC03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.52 | 39.0 | 3.51e-01 | 94.2% | 75.8% |
| 4jndA01 | 1.10.1740.220 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.52 | 47.0 | 3.46e-01 | 100.0% | 46.2% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4989584 | 7523.1.1.17 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › OpuAC | 0.76 | 53.0 | 3.66e-01 | 73.1% | 85.6% |
| 4253460 | 321.1.1.7 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 | 0.65 | 55.0 | 3.28e-01 | 94.2% | 91.5% |
| 3471989 | 170.1.1.27 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › DUF7041 | 0.64 | 47.0 | 4.26e-01 | 80.8% | 59.5% |
| 3887209 | 110.1.1.7 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD_2 | 0.64 | 51.0 | 4.25e-01 | 100.0% | 49.0% |
| 3224902 | 197.1.1.0 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like | 0.61 | 51.0 | 4.81e-01 | 100.0% | 80.0% |
| 3290502 | 101.35.1.2 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Lipoprotein_Ltp | 0.59 | 50.0 | 5.11e-01 | 98.1% | 92.0% |
| 4126690 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.56 | 51.0 | 5.04e-01 | 98.1% | 94.5% |
| 3491024 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.56 | 45.0 | 4.16e-01 | 98.1% | 100.0% |
| 3960202 | 3721.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 | 0.54 | 44.0 | 4.11e-01 | 100.0% | 92.9% |
| 4990623 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.53 | 40.0 | 3.68e-01 | 84.6% | 87.1% |
| 3966878 | 3721.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 | 0.51 | 41.0 | 3.85e-01 | 100.0% | 85.7% |