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NC_049340.1__YP_009873771.1__HYO65_gp087__00087

Bact-Vir

Identity

Accession:: NC_049340 ↗
Kingdom:: phage

Quality

96.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shirahamavirus› Tenacibaculum_phage_PTm1

TaxID: 2547425

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-72

PDB

Domain cluster: rep: LacPavin_0818_WC45_scaffold_65992_prodigal-single.1__X__X__00231__D20-80

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3aiiA03	2.40.240.10	Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P	0.60	31.0	2.90e-01	95.7%	38.2%
6j5cA02	3.30.67.10	Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2	0.59	44.0	4.14e-01	79.7%	79.5%
1vq8T00	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.58	41.0	3.48e-01	75.4%	52.1%
1vwxY00	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.56	40.0	3.24e-01	75.4%	46.3%
1ycyA00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.56	41.0	4.26e-01	79.7%	88.7%
2jmuA01	2.40.320.10	Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001	0.52	40.0	2.94e-01	88.4%	82.2%
1fc6A02	2.30.42.10	Mainly Beta › Roll › Pdz3 Domain › PDZ domain	0.51	38.0	3.53e-01	82.6%	98.9%
1jheA00	2.10.109.10	Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A	0.50	39.0	3.28e-01	85.5%	78.2%
2lt1A00	2.40.10.170	Mainly Beta › Beta Barrel › Thrombin, subunit H ›	0.50	37.0	3.65e-01	79.7%	80.0%
2i50A00	3.30.40.10	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger)	0.50	35.0	2.90e-01	72.5%	52.5%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3715776	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.63	45.0	4.63e-01	91.3%	81.5%
3885050	4.1.1.360 ↗	beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2	0.62	50.0	3.70e-01	88.4%	34.3%
4026678	4.1.1.13 ↗	beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd	0.59	40.0	3.98e-01	75.4%	68.6%
2855766	4.1.1.95 ↗	beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26	0.57	40.0	3.29e-01	75.4%	46.6%
4994549	4.1.1.95 ↗	beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26	0.57	43.0	3.32e-01	82.6%	57.6%
4180317	4.1.1.295 ↗	beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26	0.57	41.0	3.40e-01	76.8%	68.0%
4943161	4.1.1.95 ↗	beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26	0.57	41.0	3.35e-01	76.8%	66.9%
3487003	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.56	40.0	3.25e-01	75.4%	46.7%
3591612	4.18.1.1 ↗	beta barrels › SH3 › Plus3 › Plus3 › Plus-3	0.56	47.0	3.81e-01	100.0%	69.3%
4943011	4.11.1.2 ↗	beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26	0.56	40.0	3.69e-01	78.3%	64.2%
3515143	4.1.1.34 ↗	beta barrels › SH3 › SH3 › SH3 › MBT	0.56	48.0	3.99e-01	98.6%	68.0%
4069560	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.53	38.0	3.71e-01	76.8%	88.0%
3188774	4.1.1.146 ↗	beta barrels › SH3 › SH3 › SH3 › Ribosomal_uL24m-like	0.52	46.0	3.00e-01	100.0%	39.4%
3257607	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.52	45.0	4.38e-01	97.1%	93.3%
4507316	220.1.1.20 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH	0.51	37.0	3.23e-01	78.3%	70.4%