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NC_049340.1__YP_009873843.1__HYO65_gp159__00159

Bact-Vir

NC_049340.1__YP_009873843.1__HYO65_gp159__00159

Identity

Accession:
NC_049340 ↗
Kingdom:
phage

Quality

78.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shirahamavirus› Tenacibaculum_phage_PTm1

TaxID: 2547425

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-75
PDB
Domain cluster: rep: NC_019538.1__YP_007010153.1__F485_gp168__00127__D8-74
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vcaA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.63 48.0 4.00e-01 84.6% 86.6%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.63 47.0 3.79e-01 83.1% 74.8%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 53.0 3.88e-01 100.0% 69.5%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.59e-01 93.8% 98.0%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.60 46.0 4.38e-01 83.1% 72.7%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 48.0 4.39e-01 92.3% 78.0%
3rriA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 31.0 2.47e-01 100.0% 23.7%
2xu7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 44.0 2.80e-01 83.1% 72.5%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.58 39.0 3.51e-01 70.8% 87.9%
3dsoA00 2.40.10.300 Mainly Beta › Beta Barrel › Thrombin, subunit H › Copper resistance protein K 0.57 39.0 3.89e-01 75.4% 69.7%
5cxbA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 42.0 2.65e-01 80.0% 41.6%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.57 46.0 3.41e-01 96.9% 44.4%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.56 48.0 4.60e-01 98.5% 90.9%
5ov3B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 42.0 2.78e-01 81.5% 45.5%
2fhxA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 41.0 2.76e-01 76.9% 25.7%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 4.15e-01 80.0% 96.0%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.55 44.0 4.17e-01 92.3% 98.8%
1pguA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.81e-01 90.8% 99.4%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 4.17e-01 92.3% 100.0%
3t8qB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 40.0 3.43e-01 81.5% 94.8%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.53 37.0 2.62e-01 76.9% 37.7%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.53 39.0 4.23e-01 83.1% 94.5%
1o75A02 2.30.30.470 Mainly Beta › Roll › SH3 type barrels. › Penicillin-binding protein Tp47, domain B 0.52 44.0 3.78e-01 98.5% 85.7%
4le7A02 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.52 40.0 3.75e-01 84.6% 68.3%
4okcA01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.52 39.0 3.87e-01 84.6% 78.3%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 4.23e-01 86.2% 100.0%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 39.0 3.57e-01 89.2% 100.0%
4cvbA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.51 41.0 2.41e-01 90.8% 89.9%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5016556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 51.0 4.65e-01 90.8% 86.7%
3413670 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.62 44.0 4.83e-01 93.8% 90.7%
3435582 5.3.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.62 49.0 3.79e-01 86.2% 82.1%
4277213 4.1.1.431 ↗ beta barrels › SH3 › SH3 › SH3 › PF27152 0.61 48.0 4.79e-01 95.4% 82.9%
5025364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 50.0 4.83e-01 96.9% 85.3%
3792501 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.60 45.0 2.87e-01 80.0% 45.6%
3486330 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.67e-01 95.4% 100.0%
4540843 4.1.1.434 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2642 0.59 48.0 4.83e-01 98.5% 92.3%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.59 48.0 4.81e-01 96.9% 92.3%
5035934 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 47.0 4.70e-01 92.3% 90.8%
3610398 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 40.0 3.80e-01 80.0% 62.7%
4147366 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.57 40.0 4.49e-01 80.0% 100.0%
4948433 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.56 47.0 4.73e-01 98.5% 97.1%
3708672 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.56 40.0 3.63e-01 72.3% 84.7%
5053906 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.56 44.0 4.52e-01 90.8% 100.0%
5081442 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.56 46.0 4.60e-01 100.0% 91.4%
4158712 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 46.0 4.60e-01 100.0% 94.3%
3705932 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 41.0 2.58e-01 80.0% 31.7%
4128902 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 39.0 4.27e-01 81.5% 100.0%
4321106 5.1.4.307 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 0.54 41.0 2.60e-01 86.2% 94.1%
4945675 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.53 46.0 3.58e-01 100.0% 43.3%
3713696 5.1.4.297 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.53 39.0 2.44e-01 80.0% 66.1%
4512566 2.1.1.60 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.52 28.0 3.23e-01 81.5% 71.1%
3577864 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.51 37.0 3.47e-01 90.8% 61.2%
4041343 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.50 35.0 3.76e-01 76.9% 100.0%