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NC_049340.1__YP_009873860.1__HYO65_gp176__00176

Bact-Vir

NC_049340.1__YP_009873860.1__HYO65_gp176__00176

Identity

Accession:
NC_049340 ↗
Kingdom:
phage

Quality

86.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shirahamavirus› Tenacibaculum_phage_PTm1

TaxID: 2547425

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-76
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 45.0 2.79e-01 78.2% 64.2%
6fgjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 45.0 3.28e-01 81.8% 88.0%
5jldA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 45.0 2.97e-01 85.5% 46.6%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 43.0 3.11e-01 83.6% 97.1%
3eujB00 1.10.225.40 Mainly Alpha › Orthogonal Bundle › NK-Lysin › MukF, C-terminal domain 0.57 44.0 3.86e-01 89.1% 58.9%
3aa0B01 1.20.58.570 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain 0.57 41.0 3.53e-01 87.3% 48.9%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 3.65e-01 94.5% 43.9%
3bm7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 3.30e-01 81.8% 69.8%
6l3tA01 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.54 39.0 2.67e-01 78.2% 53.8%
1a5kC02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.53 42.0 2.63e-01 94.5% 94.8%
5di3B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 40.0 2.82e-01 87.3% 24.5%
2kc1A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 37.0 3.22e-01 78.2% 48.4%
3dmcA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 46.0 3.43e-01 100.0% 84.3%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.50 41.0 2.85e-01 92.7% 50.7%
3t69A02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.50 38.0 2.72e-01 92.7% 96.0%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4087732 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.64 46.0 2.74e-01 80.0% 26.1%
1247620 101.1.1.72 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GP3_package 0.61 47.0 3.56e-01 85.5% 56.8%
1442348 327.18.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A › Ribosomal_S7e 0.60 45.0 3.63e-01 81.8% 47.7%
3357805 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.59 50.0 4.62e-01 100.0% 96.0%
5050894 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.58 48.0 3.29e-01 100.0% 65.4%
4934034 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 42.0 2.71e-01 100.0% 15.4%
4849346 7581.1.1.1 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.57 45.0 2.88e-01 87.3% 18.8%
3731895 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 39.0 3.75e-01 76.4% 66.7%
3915527 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.55 38.0 3.54e-01 76.4% 56.0%
4984635 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 42.0 3.29e-01 83.6% 39.0%
4366495 221.1.1.36 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.54 36.0 3.29e-01 78.2% 47.5%
3594109 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.53 42.0 3.03e-01 96.4% 31.3%
3672413 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 44.0 3.85e-01 100.0% 80.0%
4876714 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.52 45.0 3.10e-01 100.0% 89.2%
3695736 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.51 42.0 2.61e-01 98.2% 25.1%
5033945 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.51 36.0 3.31e-01 74.5% 60.0%
3726929 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.50 37.0 2.43e-01 85.5% 84.8%