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NC_049340.1__YP_009873929.1__HYO65_gp245__00245

Bact-Vir

NC_049340.1__YP_009873929.1__HYO65_gp245__00245

Identity

Accession:
NC_049340 ↗
Kingdom:
phage

Quality

71.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shirahamavirus› Tenacibaculum_phage_PTm1

TaxID: 2547425

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-85
PDB
Domain cluster: rep: KF147891.1__AGS81953.1__PaBG_00069__00069__D24-99
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b8vA03 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.78 62.0 6.42e-01 98.1% 98.0%
1e0gA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.76 58.0 6.07e-01 100.0% 95.8%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 62.0 5.22e-01 96.3% 58.0%
1a6sA00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.65 47.0 4.15e-01 81.5% 90.8%
2vqeM01 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 48.0 4.52e-01 92.6% 85.9%
2hivA01 1.10.3260.10 Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain 0.60 49.0 3.32e-01 94.4% 78.4%
2lvaA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 37.0 3.87e-01 75.9% 84.1%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 39.0 3.61e-01 77.8% 71.2%
6k8nA02 1.10.290.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 0.54 37.0 3.03e-01 75.9% 89.1%
2dzlA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.53 36.0 3.43e-01 77.8% 59.1%
1hr6A01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.50 38.0 2.71e-01 92.6% 35.5%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3458171 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.91 77.0 7.18e-01 100.0% 75.4%
5004560 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 81.0 8.05e-01 100.0% 94.5%
4177991 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 78.0 7.84e-01 100.0% 92.7%
3955076 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 70.0 7.51e-01 87.0% 100.0%
4995817 101.15.1.4 ↗ alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 0.89 82.0 7.43e-01 100.0% 77.1%
3587382 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 77.0 7.74e-01 100.0% 94.5%
3337080 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.88 73.0 7.09e-01 100.0% 81.7%
2074716 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 72.0 7.47e-01 98.1% 94.1%
None — 0.86 76.0 5.67e-01 100.0% 41.6%
3417561 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 76.0 4.62e-01 100.0% 17.6%
4137479 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.85 72.0 6.08e-01 100.0% 57.6%
3166029 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.84 73.0 7.32e-01 100.0% 94.5%
4069716 101.15.1.14 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 0.84 73.0 5.51e-01 100.0% 42.5%
2047861 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.82 76.0 7.46e-01 100.0% 94.8%
3979943 101.15.1.3 ↗ alpha arrays › HTH › LysM domain › LysM domain › Phage_tail_X 0.82 67.0 6.94e-01 90.7% 96.0%
3426433 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 74.0 7.18e-01 100.0% 95.0%
1759182 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 65.0 6.66e-01 100.0% 94.1%
2895417 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.80 69.0 6.21e-01 100.0% 68.8%
3324708 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.80 73.0 7.04e-01 100.0% 90.0%
2042916 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.79 62.0 6.21e-01 98.1% 87.0%
1097264 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.78 67.0 6.08e-01 100.0% 71.8%
3422876 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.77 68.0 6.62e-01 100.0% 90.0%
4047213 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.74 64.0 6.44e-01 100.0% 96.4%
2429116 219.1.1.15 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.65 49.0 3.52e-01 81.5% 59.6%
2429117 219.1.1.15 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.64 51.0 3.67e-01 88.9% 61.5%
4945405 4095.1.1.3 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_M 0.62 51.0 3.41e-01 92.6% 80.9%
None — 0.60 49.0 2.87e-01 96.3% 52.5%
4969182 4095.1.1.0 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain 0.56 39.0 2.72e-01 77.8% 45.6%
4580190 103.1.1.14 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 0.54 36.0 3.47e-01 75.9% 58.5%
3596762 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.53 33.0 3.55e-01 74.1% 94.3%