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NC_049340.1__YP_009873930.1__HYO65_gp246__00246

Bact-Vir

NC_049340.1__YP_009873930.1__HYO65_gp246__00246

Identity

Accession:
NC_049340 ↗
Kingdom:
phage

Quality

77.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-126
PDB
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.74 46.0 5.77e-01 76.0% 100.0%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.72 45.0 4.76e-01 75.2% 70.3%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.70 47.0 4.78e-01 75.2% 69.7%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.70 44.0 4.73e-01 75.2% 73.4%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.69 45.0 4.67e-01 75.2% 70.9%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 48.0 4.26e-01 76.0% 73.8%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 28.0 3.90e-01 91.2% 88.9%
2b9lA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 44.0 4.15e-01 100.0% 64.3%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.58 23.0 3.67e-01 74.4% 97.9%
1ddgA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 34.0 3.56e-01 70.4% 62.3%
4i93A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 34.0 3.85e-01 75.2% 77.9%
3aqoA02 3.30.1360.200 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.56 40.0 3.91e-01 100.0% 66.7%
4gioA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 36.0 4.00e-01 77.6% 84.4%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 37.0 3.82e-01 93.6% 75.7%
2d5wA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.53 40.0 4.13e-01 89.6% 83.8%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.52 33.0 3.36e-01 75.2% 64.5%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 44.0 4.10e-01 100.0% 75.0%
3rbyA01 2.40.128.320 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, N-terminal domain 0.50 36.0 3.40e-01 72.8% 91.3%
2amhA00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.50 43.0 3.69e-01 92.8% 66.7%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995815 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.81 60.0 6.05e-01 76.0% 77.6%
3967435 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.74 55.0 6.18e-01 84.0% 100.0%
4393593 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.74 54.0 6.09e-01 78.4% 97.9%
4260084 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.74 48.0 4.89e-01 76.8% 67.5%
4031285 1.1.13.64 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › TT1_Tal 0.74 51.0 5.92e-01 77.6% 97.8%
5002750 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 55.0 5.96e-01 77.6% 100.0%
3977382 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 53.0 5.97e-01 74.4% 100.0%
3948350 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.71 51.0 5.67e-01 73.6% 98.0%
4316037 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.71 44.0 4.68e-01 75.2% 70.0%
4514734 1.1.13.42 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Tail_tube 0.70 51.0 5.46e-01 76.0% 96.4%
3942090 1.1.5.77 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube 0.69 51.0 4.65e-01 76.8% 78.8%
2137681 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.69 45.0 4.83e-01 75.2% 76.1%
3511358 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 48.0 5.36e-01 92.0% 93.0%
3332690 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 38.0 4.17e-01 91.2% 73.0%
4952429 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 48.0 5.28e-01 80.8% 98.0%
4952629 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 47.0 5.16e-01 78.4% 98.0%
4952430 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 50.0 5.30e-01 88.8% 98.2%
3900731 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.60 43.0 3.32e-01 76.8% 33.1%
2877144 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.60 41.0 3.10e-01 95.2% 29.2%
4507316 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.57 34.0 3.60e-01 94.4% 65.2%
3886671 1.1.7.4 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.56 40.0 3.74e-01 90.4% 58.1%
4960006 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 43.0 4.60e-01 100.0% 93.6%
3326194 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 39.0 4.13e-01 73.6% 100.0%
4057590 1.1.5.86 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3 0.54 47.0 4.59e-01 100.0% 84.3%
3631248 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.53 36.0 3.66e-01 95.2% 69.6%
3596923 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 33.0 3.41e-01 88.0% 69.2%
D2 medium residues 129-220
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3adyA00 3.55.50.60 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › DotD protein 0.77 66.0 6.41e-01 92.4% 83.3%
1wruA02 3.55.50.10 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains 0.77 65.0 6.66e-01 90.2% 97.7%
1k28D02 3.55.50.20 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.76 64.0 6.57e-01 91.3% 100.0%
4jtmA00 3.55.50.30 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.75 60.0 6.40e-01 87.0% 97.5%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.74 60.0 4.96e-01 85.9% 57.3%
4uhvA02 3.55.50.10 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains 0.73 63.0 6.40e-01 94.6% 96.7%
3d37A02 3.55.50.10 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains 0.73 60.0 6.23e-01 89.1% 97.6%
4m0nA02 3.55.50.30 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.72 55.0 5.92e-01 85.9% 97.4%
7pmpA01 3.55.50.30 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.72 54.0 5.94e-01 82.6% 100.0%
3gs9A02 3.55.50.40 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.70 60.0 6.08e-01 95.7% 95.7%
2rghA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 40.0 3.00e-01 70.7% 90.0%
2vh2B01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.52 36.0 3.93e-01 70.7% 97.2%
8g3lE01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.52 42.0 3.43e-01 89.1% 95.5%
5uayA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.50 38.0 4.06e-01 89.1% 91.5%
2x8xX02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.50 38.0 4.13e-01 92.4% 100.0%
6j09A02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.50 39.0 4.22e-01 91.3% 100.0%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4809347 3070.1.1.16 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › PF30637 0.83 70.0 7.38e-01 95.7% 98.8%
3966286 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.83 65.0 7.11e-01 88.0% 100.0%
4008875 3070.1.1.4 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN 0.82 64.0 7.03e-01 88.0% 100.0%
3948879 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.82 64.0 7.00e-01 89.1% 100.0%
3503726 3070.1.1.8 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › DotD 0.82 67.0 7.15e-01 92.4% 100.0%
3977381 3070.1.1.2 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Phage_GPD 0.80 66.0 6.90e-01 94.6% 95.3%
3974036 3070.1.1.10 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › T3S_SPI-1_N0 0.80 62.0 6.77e-01 90.2% 100.0%
4087530 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.80 62.0 6.79e-01 89.1% 100.0%
1815424 3070.1.1.4 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN 0.79 60.0 6.56e-01 87.0% 98.7%
3967438 3070.1.1.2 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Phage_GPD 0.78 68.0 6.92e-01 93.5% 97.8%
146928 3070.1.1.8 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › DotD 0.77 66.0 6.58e-01 92.4% 88.5%
3972306 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.77 68.0 6.90e-01 94.6% 96.7%
3966573 3070.1.1.2 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Phage_GPD 0.77 68.0 6.91e-01 94.6% 96.7%
3970829 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.76 68.0 6.87e-01 94.6% 96.7%
4200887 3070.1.1.17 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › YQBQ 0.74 64.0 6.54e-01 94.6% 97.8%
4033374 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.74 60.0 6.26e-01 88.0% 98.8%
4339226 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.73 61.0 6.32e-01 90.2% 96.5%
1070142 3070.1.1.11 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › type_II_gspD_N0 0.73 59.0 6.29e-01 87.0% 98.8%
3972068 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.73 59.0 6.00e-01 87.0% 91.1%
2559776 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.72 53.0 5.68e-01 79.3% 90.9%
3974983 3070.1.1.10 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › T3S_SPI-1_N0 0.72 55.0 5.83e-01 84.8% 92.5%
4031358 3070.1.1.18 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › PF26674 0.72 60.0 5.99e-01 90.2% 93.7%
4606766 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.71 60.0 6.14e-01 91.3% 100.0%
3967139 3070.1.1.11 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › type_II_gspD_N0 0.69 55.0 5.88e-01 89.1% 100.0%
2883219 3070.1.1.11 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › type_II_gspD_N0 0.64 48.0 4.90e-01 83.7% 83.3%
3282893 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.56 41.0 3.60e-01 79.3% 66.2%
4957877 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 33.0 3.74e-01 75.0% 78.6%
3388254 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.55 41.0 4.50e-01 92.4% 98.7%
3753927 389.1.1.131 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › ASTN_1_2_N 0.52 36.0 2.97e-01 71.7% 66.3%
4168700 3121.1.1.2 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 0.52 38.0 4.00e-01 92.4% 88.7%
4939665 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.51 28.0 3.00e-01 77.2% 60.0%
4446275 2003.1.4.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain 0.51 44.0 3.04e-01 97.8% 98.5%
D3 medium residues 221-298
PDB