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NC_049340.1__YP_009873931.1__HYO65_gp247__00247

Bact-Vir

NC_049340.1__YP_009873931.1__HYO65_gp247__00247

Identity

Accession:
NC_049340 ↗
Kingdom:
phage

Quality

69.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shirahamavirus› Tenacibaculum_phage_PTm1

TaxID: 2547425

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 19-44_67-113
PDB
Domain cluster: rep: IMGVR_UViG_3300009673_000588-3300009673-Ga0116185_10083622__D11-88
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.67 58.0 4.53e-01 100.0% 44.4%
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.66 58.0 4.02e-01 100.0% 39.6%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.65 53.0 4.46e-01 100.0% 52.4%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.62 43.0 3.93e-01 100.0% 53.5%
2oq5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 47.0 4.24e-01 98.6% 58.7%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 42.0 3.99e-01 100.0% 61.1%
7pzoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 46.0 4.25e-01 100.0% 64.6%
3a27A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 45.0 3.17e-01 100.0% 27.4%
1vq8R00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.58 51.0 4.10e-01 100.0% 91.3%
1uw4A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 41.0 3.87e-01 100.0% 60.4%
2j3vA02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.58 52.0 3.74e-01 100.0% 61.8%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 44.0 3.62e-01 100.0% 42.9%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.58 43.0 4.10e-01 98.6% 68.2%
5lhrA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 48.0 4.15e-01 100.0% 58.1%
2f91A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 45.0 3.98e-01 100.0% 58.4%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.56 43.0 3.50e-01 100.0% 43.8%
2aiqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 44.0 3.86e-01 100.0% 54.9%
3rtyB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 49.0 4.32e-01 100.0% 96.3%
5fcrC02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 46.0 4.09e-01 100.0% 61.7%
4m4xA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 49.0 4.12e-01 100.0% 87.3%
3o4fH02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 39.0 2.78e-01 97.3% 24.8%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.55 42.0 3.38e-01 100.0% 40.1%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.55 44.0 4.26e-01 100.0% 78.8%
2yq1C00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.55 40.0 3.35e-01 98.6% 43.5%
6r2wH02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 46.0 4.00e-01 100.0% 60.9%
3tvjB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 45.0 4.01e-01 100.0% 62.6%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 38.0 3.46e-01 86.3% 51.4%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.54 48.0 3.48e-01 100.0% 37.1%
6njyA01 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 46.0 3.99e-01 100.0% 66.7%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 3.52e-01 86.3% 53.4%
2vlgC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 48.0 4.30e-01 100.0% 96.1%
3qkbA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.53 46.0 4.25e-01 100.0% 75.5%
2ypyA00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.53 38.0 3.15e-01 98.6% 41.8%
1vwxP00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.52 45.0 3.60e-01 100.0% 88.2%
2olgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 46.0 3.79e-01 98.6% 62.8%
1em2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 43.0 3.21e-01 98.6% 61.7%
3uiuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 37.0 3.44e-01 98.6% 59.8%
4v19W00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.50 43.0 3.38e-01 98.6% 67.5%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3184389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 56.0 4.12e-01 89.0% 30.9%
5052888 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.78 63.0 5.20e-01 100.0% 50.4%
3942928 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.72 56.0 5.32e-01 100.0% 70.6%
3943282 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.72 58.0 4.95e-01 100.0% 54.2%
3023894 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.69 61.0 4.86e-01 100.0% 57.0%
3948350 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.68 59.0 5.36e-01 100.0% 71.0%
2407461 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.67 54.0 4.55e-01 100.0% 50.4%
4632598 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.67 49.0 4.10e-01 100.0% 46.7%
3467043 3468.1.1.0 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain 0.67 60.0 4.36e-01 100.0% 49.5%
4982153 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 58.0 3.97e-01 100.0% 30.0%
3591908 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 60.0 4.46e-01 100.0% 46.1%
5040464 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 49.0 4.52e-01 100.0% 61.1%
3802659 304.8.1.66 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 0.66 52.0 4.54e-01 100.0% 58.1%
4287081 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.66 53.0 4.50e-01 100.0% 52.8%
3665392 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 48.0 4.05e-01 100.0% 47.5%
3967199 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 51.0 4.61e-01 100.0% 61.0%
3224621 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 45.0 4.50e-01 100.0% 70.7%
3829654 387.1.5.7 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL 0.65 45.0 4.91e-01 100.0% 93.1%
5012991 1.1.9.23 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.64 59.0 4.93e-01 100.0% 62.5%
5016346 1.1.9.23 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.64 59.0 4.92e-01 100.0% 61.7%
4202541 1.1.9.23 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.64 58.0 4.94e-01 100.0% 62.6%
5069899 1.1.9.23 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.64 59.0 4.91e-01 100.0% 61.7%
4640974 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.64 52.0 4.43e-01 100.0% 55.0%
4189243 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.64 52.0 4.34e-01 100.0% 51.5%
3981111 1.1.7.89 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.63 52.0 4.16e-01 100.0% 43.9%
3589403 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.63 47.0 3.94e-01 98.6% 47.5%
3616946 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.62 57.0 4.98e-01 100.0% 93.3%
3605491 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.62 45.0 3.81e-01 100.0% 46.7%
4050380 1.1.7.95 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25990 0.62 51.0 4.71e-01 100.0% 71.6%
3268663 2003.1.5.82 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.62 42.0 3.01e-01 100.0% 24.3%
4027705 1.1.7.47 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Aquarius_N_2nd 0.61 54.0 4.33e-01 100.0% 64.8%
3197901 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.61 43.0 2.94e-01 100.0% 21.2%
3973898 1.1.7.89 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.61 50.0 4.05e-01 100.0% 46.9%
3784272 1.1.7.102 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 0.60 55.0 4.61e-01 100.0% 61.7%
3788989 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.60 45.0 4.37e-01 100.0% 72.5%
3717251 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 35.0 3.96e-01 80.8% 76.4%
3903912 304.8.1.15 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › TH_ACT 0.60 44.0 3.79e-01 100.0% 50.9%
3944239 1.1.13.51 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU 0.59 53.0 4.70e-01 100.0% 70.5%
4513514 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.59 53.0 4.40e-01 98.6% 97.6%
3789238 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.59 46.0 3.99e-01 100.0% 53.9%
5023086 1.1.9.23 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.59 53.0 4.41e-01 100.0% 97.6%
4600281 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.59 50.0 4.48e-01 100.0% 83.5%
5040331 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 50.0 4.07e-01 100.0% 65.5%
3880678 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 50.0 4.22e-01 100.0% 66.9%
5035880 256.1.1.0 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.57 44.0 4.79e-01 97.3% 100.0%
3942433 256.1.1.4 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › DUF4177 0.57 47.0 4.96e-01 100.0% 100.0%
3596783 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.56 41.0 3.58e-01 100.0% 49.6%
3194063 2.1.1.37 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.56 42.0 3.47e-01 80.8% 80.7%
3702886 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.56 44.0 3.10e-01 100.0% 25.6%
3192615 868.1.1.8 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › SLS1_C 0.56 51.0 3.28e-01 100.0% 40.3%
5016732 11.1.1.130 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Inhibitor_I42 0.56 40.0 3.54e-01 100.0% 50.9%
3950626 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.55 46.0 3.35e-01 100.0% 47.7%
3512548 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.54 46.0 3.29e-01 98.6% 32.1%
3879161 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 2.40e-01 100.0% 12.3%
3447437 4.18.1.1 ↗ beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.54 45.0 3.63e-01 90.4% 66.7%
4927228 872.1.1.1 ↗ a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N 0.54 43.0 4.27e-01 100.0% 86.7%
5028718 223.8.1.0 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain 0.54 40.0 3.56e-01 98.6% 55.2%
3785219 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.54 41.0 2.82e-01 100.0% 22.1%
4963976 331.6.1.1 ↗ a+b two layers › TBP-like › MoaD-related protein, C-terminal domain › MoaD-related protein, C-terminal domain › DUF1952 0.53 41.0 4.02e-01 100.0% 77.5%
3926912 10.10.1.0 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.53 46.0 3.64e-01 100.0% 55.6%
3934502 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.53 45.0 3.04e-01 100.0% 37.7%
4609163 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.53 45.0 3.15e-01 98.6% 36.6%
4152803 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.52 41.0 3.90e-01 100.0% 70.8%
4567458 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.52 43.0 3.67e-01 100.0% 56.5%
4670273 868.1.1.8 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › SLS1_C 0.52 44.0 3.16e-01 100.0% 43.3%
3297973 4957.1.1.6 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › PF31063 0.52 43.0 3.20e-01 100.0% 90.1%
4021762 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 46.0 2.65e-01 100.0% 20.5%
5029814 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.51 40.0 4.20e-01 95.9% 95.4%
3933067 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.51 45.0 3.05e-01 100.0% 29.5%
4888780 304.124.1.5 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › T4-gp15_tss 0.50 44.0 3.13e-01 100.0% 33.8%
5053029 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.50 40.0 3.69e-01 100.0% 67.4%