←Back to structures

NC_049340.1__YP_009873971.1__HYO65_gp287__00287

Bact-Vir

NC_049340.1__YP_009873971.1__HYO65_gp287__00287

Identity

Accession:
NC_049340 ↗
Kingdom:
phage

Quality

63.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shirahamavirus› Tenacibaculum_phage_PTm1

TaxID: 2547425

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 34-86
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vixA02 1.10.150.630 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.70 51.0 4.31e-01 77.4% 49.4%
2jifA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.63 47.0 3.71e-01 81.1% 66.9%
2f6kA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.62 42.0 2.65e-01 71.7% 96.7%
4uiqB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 47.0 3.36e-01 81.1% 89.5%
5wbwA01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.58 41.0 2.90e-01 73.6% 64.3%
3oymA01 1.10.340.70 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.55 43.0 3.69e-01 90.6% 58.1%
8ouzD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 38.0 2.60e-01 77.4% 73.8%
3u7eB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 2.89e-01 88.7% 70.7%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.52 42.0 3.56e-01 94.3% 95.7%
3owaA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.50 40.0 3.20e-01 100.0% 52.9%
1t6sB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 3.28e-01 79.2% 80.5%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3457578 3846.1.1.0 ↗ alpha bundles › IcmR › IcmR › IcmR 0.85 53.0 5.75e-01 81.1% 75.6%
3218052 3065.1.1.1 ↗ alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › ANIS5_cation-bd 0.83 66.0 5.03e-01 86.8% 46.7%
3234685 3065.1.1.1 ↗ alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › ANIS5_cation-bd 0.83 65.0 4.92e-01 84.9% 45.8%
3232753 632.2.1.21 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › ANIS5_cation-bd 0.80 62.0 5.67e-01 84.9% 78.6%
3229627 632.2.1.21 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › ANIS5_cation-bd 0.79 57.0 5.90e-01 75.5% 98.0%
3267759 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.71 55.0 3.76e-01 81.1% 64.4%
3692587 7087.1.1.1 ↗ alpha bundles › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain › EBP 0.70 54.0 3.72e-01 81.1% 76.2%
3226874 3065.1.1.1 ↗ alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › ANIS5_cation-bd 0.70 53.0 4.20e-01 83.0% 52.7%
4112673 310.2.1.1 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.69 53.0 3.55e-01 81.1% 82.0%
4073498 2005.1.1.25 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › HIGH_NTase1 0.68 54.0 3.24e-01 86.8% 56.1%
3635088 101.1.8.10 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3435 0.68 45.0 3.95e-01 75.5% 46.3%
3248198 4033.1.1.1 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N 0.64 48.0 3.58e-01 81.1% 58.5%
3846182 261.1.1.1 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.63 54.0 3.05e-01 100.0% 37.4%
1283433 3836.1.1.1 ↗ alpha complex topology › SidC N-terminal domain › SidC N-terminal domain › SidC N-terminal domain › SidC_N 0.62 50.0 2.86e-01 92.5% 12.0%
3606807 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.62 46.0 3.72e-01 81.1% 85.7%
3783425 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 50.0 4.32e-01 92.5% 58.8%
3202973 101.1.1.212 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_68 0.61 47.0 4.19e-01 86.8% 57.5%
3935409 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 45.0 4.62e-01 86.8% 100.0%
3448002 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.57 45.0 3.75e-01 92.5% 50.5%
2527977 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.56 44.0 4.04e-01 90.6% 64.8%
4562321 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.56 44.0 4.29e-01 90.6% 78.3%
3926268 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 43.0 3.77e-01 94.3% 57.8%
3174238 101.1.1.247 ↗ alpha arrays › HTH › HTH › Three-helical HTH › zf-H2C2 0.53 43.0 4.05e-01 94.3% 78.6%
3190774 316.1.1.25 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap_D4 0.53 42.0 2.83e-01 86.8% 45.6%
3599005 4033.1.1.0 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like 0.51 40.0 3.28e-01 100.0% 61.6%