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NC_049342.1__YP_009949200.1__HYO67_gp01__00001

Bact-Vir

Identity

Accession:: NC_049342 ↗
Kingdom:: phage

Quality

85.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Wadgaonvirus› Escherichia_phage_500465-1

TaxID: 2716351

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 151-281

PDB

Domain cluster: rep: OQ680521.1__WGL39668.1__P05B_000028__00028__D126-229

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05840.20 best	Phage_GPA	73.0	3.10e-20	81.7%	32.1%

CATH (22)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4okvE00	6.10.140.1890	Special › Helix non-globular › Helix Hairpins ›	0.68	34.0	4.64e-01	79.4%	96.9%
7e5aB02	1.20.1000.10	Mainly Alpha › Up-down Bundle › Signaling Protein - Interferon-induced Guanylate-binding Protein 1; Chain A, domain 1 › Guanylate-binding protein, C-terminal domain	0.67	41.0	3.77e-01	98.5%	47.6%
6ko8A00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.65	45.0	4.03e-01	71.0%	97.3%
3ppbA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.64	45.0	3.95e-01	71.0%	97.9%
4abmD00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.61	31.0	3.97e-01	73.3%	81.8%
1st6A04	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.61	39.0	4.17e-01	93.1%	72.6%
3pasA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.60	41.0	3.68e-01	70.2%	96.3%
2wzkA03	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.59	42.0	4.55e-01	77.1%	86.4%
7ae2A01	1.20.120.580	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like	0.58	43.0	4.32e-01	87.0%	73.7%
4oydB00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.58	43.0	4.59e-01	96.2%	88.0%
2bnlC00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.57	34.0	3.43e-01	93.1%	56.7%
1sumB01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.56	37.0	4.06e-01	92.4%	82.2%
3hr0B01	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.56	31.0	3.73e-01	89.3%	86.1%
1ij5A01	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	27.0	3.50e-01	78.6%	84.2%
2yk0A03	1.20.58.1930	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	42.0	3.54e-01	84.0%	86.3%
4dmvA01	1.20.58.1190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	34.0	4.02e-01	94.7%	98.8%
1fx8A00	1.20.1080.10	Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein.	0.53	47.0	3.83e-01	99.2%	83.5%
2yevA03	1.20.120.80	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle	0.52	39.0	3.55e-01	78.6%	73.9%
1sqgA01	1.10.940.10	Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like	0.52	29.0	2.92e-01	100.0%	51.1%
1jogA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.52	40.0	4.04e-01	86.3%	80.0%
3u9jA00	1.20.120.520	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like	0.51	42.0	3.97e-01	89.3%	90.4%
6a3kA00	1.20.120.10	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562	0.50	35.0	3.58e-01	71.0%	98.4%

ECOD (28)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4468389	5086.1.1.101 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › SH3BP5	0.68	32.0	3.41e-01	71.8%	49.2%
2387822	604.38.1.0 ↗	alpha bundles › Spectrin repeat-like › Legionella effector SdeA 3-helical bundle › Legionella effector SdeA 3-helical bundle	0.62	37.0	4.04e-01	89.3%	71.4%
3234006	5001.1.1.66 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg	0.61	42.0	3.22e-01	70.2%	81.4%
3992995	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.61	38.0	4.22e-01	86.3%	78.6%
3737781	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.59	38.0	4.15e-01	91.6%	79.0%
4889682	11.2.1.20 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › FerB	0.59	41.0	3.88e-01	70.2%	79.7%
5047547	310.2.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF	0.59	40.0	4.22e-01	96.2%	78.3%
4954575	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.57	34.0	3.99e-01	90.8%	85.6%
3270283	609.1.1.1 ↗	alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › PARP_reg	0.56	37.0	3.75e-01	99.2%	65.2%
3488291	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.56	39.0	4.27e-01	90.8%	87.6%
3509230	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.55	41.0	3.25e-01	77.1%	57.5%
5083349	601.15.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Proteasome activator reg(alpha) › Proteasome activator reg(alpha)	0.55	37.0	3.95e-01	80.9%	79.1%
4958742	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.55	36.0	3.73e-01	89.3%	69.6%
3171100	603.1.1.100 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017	0.54	34.0	3.83e-01	84.7%	82.0%
3965811	3711.1.1.0 ↗	alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein	0.53	32.0	3.42e-01	85.5%	68.8%
3704019	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.53	35.0	3.89e-01	86.3%	83.8%
3474226	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.52	38.0	3.72e-01	90.1%	69.3%
3237394	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.52	38.0	3.64e-01	93.1%	63.9%
3174349	5048.1.1.2 ↗	alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › Form_Nir_trans	0.52	47.0	3.75e-01	100.0%	69.6%
3662533	603.1.1.138 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › BPS1	0.52	33.0	3.96e-01	88.5%	94.4%
3373206	3684.1.1.0 ↗	alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like	0.52	44.0	3.41e-01	93.1%	60.4%
3594084	604.5.1.0 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895)	0.51	36.0	3.51e-01	71.8%	100.0%
4946612	601.7.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain	0.51	41.0	4.31e-01	87.0%	96.5%
3934654	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.51	39.0	3.48e-01	90.8%	57.2%
3496238	5082.1.1.0 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like	0.51	41.0	3.53e-01	86.3%	92.6%
3482404	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.51	37.0	3.05e-01	74.8%	80.4%
3704718	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.50	40.0	4.02e-01	88.5%	83.0%
3700079	5082.1.1.1 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux	0.50	40.0	3.43e-01	87.0%	86.7%

D2 medium residues 314-373

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05840.20 best	Phage_GPA	86.1	3.20e-24	100.0%	18.4%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5u89A02	3.30.559.10	Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain	0.56	39.0	2.84e-01	73.3%	86.7%
5xgbA03	3.20.20.450	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain	0.56	48.0	3.23e-01	98.3%	94.8%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3947798	304.8.1.70 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Phage_GPA	0.89	80.0	4.99e-01	96.7%	56.1%
3956498	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.67	45.0	2.86e-01	70.0%	18.7%
370101	2002.5.1.1 ↗	a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL	0.56	46.0	3.02e-01	90.0%	89.7%
3194119	7579.1.1.23 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PAF-AH_p_II	0.52	44.0	2.72e-01	93.3%	87.3%
1822940	2003.1.2.18 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain	0.51	43.0	2.86e-01	95.0%	67.5%