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NC_049342.1__YP_009949203.1__HYO67_gp04__00004

Bact-Vir

Identity

Accession:: NC_049342 ↗
Kingdom:: phage

Quality

82.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Wadgaonvirus› Escherichia_phage_500465-1

TaxID: 2716351

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-66

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01695.24 best	IstB_IS21	64.1	2.00e-17	84.9%	23.1%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2vmaA00	1.20.81.30	Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F	0.65	52.0	4.29e-01	100.0%	47.5%
4oe8C00	1.10.8.1170	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.62	52.0	4.76e-01	92.4%	96.6%
4dbgB02	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.60	50.0	5.18e-01	93.9%	98.4%
1e91A00	1.20.1160.11	Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix	0.60	43.0	4.02e-01	77.3%	76.5%
2i5uA00	1.10.10.630	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like	0.59	44.0	4.22e-01	81.8%	74.0%
5axmB00	3.30.70.3000	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1)	0.55	49.0	3.33e-01	100.0%	27.2%
7c1iA01	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.55	44.0	3.84e-01	87.9%	61.0%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4537420	2004.1.1.68 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IstB_IS21	0.92	80.0	5.22e-01	93.9%	24.9%
None	—		0.91	79.0	5.16e-01	93.9%	24.9%
4425456	2004.1.1.68 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IstB_IS21	0.88	74.0	4.92e-01	87.9%	26.4%
4992926	4009.1.1.0 ↗	alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins	0.74	57.0	5.49e-01	81.8%	81.3%
4981035	5058.1.1.16 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1	0.74	52.0	5.24e-01	74.2%	75.4%
5047182	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.69	48.0	4.88e-01	74.2%	80.0%
3453715	603.1.1.118 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF7610	0.68	47.0	4.19e-01	71.2%	54.4%
3702894	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.68	47.0	5.25e-01	84.8%	94.0%
2429105	4992.1.1.0 ↗	extended segments › RelB-like › RelB-like › RelB-like	0.68	46.0	4.48e-01	71.2%	64.9%
4086109	5069.1.1.6 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › COX15-CtaA	0.66	50.0	3.14e-01	80.3%	18.5%
3755193	4146.1.1.7 ↗	alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › DMAP_binding	0.65	47.0	4.46e-01	77.3%	66.3%
3896767	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.62	52.0	4.99e-01	89.4%	90.7%
3850399	3788.1.1.13 ↗	alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › DMAP_binding	0.62	50.0	4.55e-01	87.9%	70.0%
4119015	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.62	49.0	5.14e-01	89.4%	95.0%
4030010	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.62	42.0	4.41e-01	74.2%	78.3%
5028238	5069.1.1.0 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes	0.62	48.0	3.61e-01	83.3%	65.8%
4216874	632.7.1.1 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70	0.61	50.0	4.11e-01	87.9%	63.5%
4648665	632.7.1.1 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70	0.59	49.0	4.46e-01	87.9%	84.7%
4029754	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.59	43.0	3.99e-01	78.8%	64.7%
4588680	5068.1.1.0 ↗	alpha bundles › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	0.56	45.0	3.65e-01	100.0%	83.7%
3412952	103.1.1.85 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28528	0.56	44.0	4.56e-01	89.4%	95.0%

D2 medium residues 69-119

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01695.24 best	IstB_IS21	48.4	1.30e-12	98.0%	19.8%