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NC_049342.1__YP_009949252.1__HYO67_gp53__00053
Bact-VirNC_049342.1__YP_009949252.1__HYO67_gp53__00053
Identity
- Accession:
- NC_049342 ↗
- Kingdom:
- phage
Quality
71.0
mean pLDDT
Taxonomy
TaxID: 2716351
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-121
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01025.25 best | GrpE | 84.8 | 7.80e-24 | 76.0% | 52.1% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 58.0 | 4.56e-01 | 99.2% | 41.5% |
| 2gl2B00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.71 | 52.0 | 5.47e-01 | 100.0% | 85.3% |
| 1r1uB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 33.0 | 3.76e-01 | 81.8% | 84.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4428959 | 3939.1.1.145 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › GrpE | 0.84 | 77.0 | 7.44e-01 | 97.5% | 92.6% |
| 4503625 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.83 | 68.0 | 6.80e-01 | 84.3% | 88.6% |
| 4445928 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.83 | 78.0 | 7.23e-01 | 100.0% | 85.3% |
| 3876221 | 5.1.12.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains › KIF21A | 0.82 | 59.0 | 5.36e-01 | 99.2% | 57.4% |
| 4487102 | 706.1.1.1 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE | 0.81 | 63.0 | 6.58e-01 | 79.3% | 92.7% |
| 4300671 | 148.1.3.209 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › GrpE | 0.80 | 62.0 | 6.49e-01 | 80.2% | 91.2% |
| 4961961 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.77 | 37.0 | 4.72e-01 | 79.3% | 76.0% |
| 4045132 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.73 | 52.0 | 5.46e-01 | 92.6% | 80.0% |
| 3933901 | 3619.1.1.0 ↗ | alpha arrays › Nucleoporin NUP120 helical domain › Nucleoporin NUP120 helical domain › Nucleoporin NUP120 helical domain | 0.58 | 34.0 | 2.88e-01 | 83.5% | 32.6% |
| 3550154 | 109.4.1.1493 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle, ZW10_C, ZW10_C2 | 0.55 | 46.0 | 2.91e-01 | 91.7% | 39.6% |