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NC_049343.1__YP_009949258.1__HYO68_gp02__00002

Bact-Vir

NC_049343.1__YP_009949258.1__HYO68_gp02__00002

Identity

Accession:
NC_049343 ↗
Kingdom:
phage

Quality

56.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Gemsvirus› Escherichia_phage_500465-2

TaxID: 2716352

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-50_104-118
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h8lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 45.0 3.17e-01 91.8% 71.7%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.55 43.0 3.41e-01 90.2% 46.8%
4geqB00 3.30.160.430 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 35.0 3.62e-01 86.9% 69.0%
1orfA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 43.0 3.63e-01 88.5% 77.1%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 36.0 3.72e-01 91.8% 76.4%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.83e-01 90.2% 66.7%
3lodA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 37.0 2.86e-01 77.0% 46.9%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 41.0 3.93e-01 86.9% 80.0%
1yjdC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 2.87e-01 72.1% 63.6%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 38.0 3.24e-01 82.0% 68.9%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 37.0 2.34e-01 78.7% 30.1%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.51 38.0 3.43e-01 88.5% 96.9%
1ltoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 38.0 3.25e-01 85.2% 78.9%
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 41.0 3.69e-01 95.1% 66.3%
2w20B01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.50 37.0 2.35e-01 83.6% 22.1%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3636081 4972.1.1.1 ↗ beta barrels › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › DUF917_C 0.66 56.0 4.30e-01 100.0% 73.9%
4327595 4.1.1.402 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2761 0.62 42.0 3.70e-01 72.1% 98.9%
3166171 3355.1.1.16 ↗ alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DcuC 0.60 44.0 2.61e-01 78.7% 79.0%
3265256 4161.1.1.0 ↗ beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.60 46.0 2.99e-01 85.2% 55.7%
3991790 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 3.84e-01 86.9% 61.9%
3260051 4161.1.1.0 ↗ beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.57 42.0 2.76e-01 78.7% 62.6%
4045712 4161.1.1.0 ↗ beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.54 40.0 2.72e-01 82.0% 50.8%
3519816 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.54 41.0 2.79e-01 83.6% 45.4%
3737198 2.1.1.82 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_CSD1 0.54 45.0 4.20e-01 96.7% 90.0%
4017465 928.1.1.0 ↗ few secondary structure elements › Bubble protein › Bubble protein › Bubble protein 0.53 35.0 3.84e-01 82.0% 87.8%
3786604 220.1.1.244 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF31261 0.53 40.0 3.34e-01 91.8% 43.2%
3704896 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 44.0 2.88e-01 95.1% 96.9%
3599391 868.1.1.2 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA_triPase 0.52 39.0 2.70e-01 82.0% 49.3%
4410680 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.52 45.0 2.86e-01 96.7% 65.1%
4221106 2006.1.1.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.51 37.0 2.67e-01 78.7% 57.4%
3409083 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.51 44.0 3.46e-01 100.0% 80.0%
3286100 4052.1.1.0 ↗ beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like 0.50 41.0 3.48e-01 93.4% 63.6%
3503638 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.50 36.0 2.64e-01 78.7% 53.4%
3598700 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 43.0 2.55e-01 98.4% 64.2%
151131 316.1.1.21 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit 0.50 41.0 3.12e-01 93.4% 71.5%