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NC_049343.1__YP_009949295.1__HYO68_gp39__00039
Bact-VirNC_049343.1__YP_009949295.1__HYO68_gp39__00039
Identity
- Accession:
- NC_049343 ↗
- Kingdom:
- phage
Quality
71.4
mean pLDDT
Taxonomy
TaxID: 2716352
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 31-146
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF27202.1 best | Flk_N | 86.9 | 1.20e-24 | 53.4% | 96.8% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lquA01 | 1.20.1420.40 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Decorin-binding protein | 0.66 | 41.0 | 3.77e-01 | 72.4% | 47.4% |
| 2fji101 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.62 | 43.0 | 3.54e-01 | 71.6% | 44.5% |
| 3psfA02 | 1.10.10.650 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like | 0.60 | 51.0 | 4.79e-01 | 92.2% | 99.3% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 31.0 | 2.84e-01 | 77.6% | 38.9% |
| 4fz4A00 | 1.20.140.130 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.54 | 48.0 | 4.41e-01 | 100.0% | 94.2% |
| 3r6nB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 43.0 | 3.47e-01 | 85.3% | 69.6% |
| 3lnrA00 | 1.20.120.1530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 40.0 | 3.60e-01 | 94.8% | 57.5% |
| 2cmrA00 | 1.20.58.1860 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 44.0 | 3.72e-01 | 89.7% | 66.1% |
| 4uiqB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 29.0 | 2.66e-01 | 79.3% | 39.9% |
| 1bdgA01 | 3.40.367.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › | 0.51 | 42.0 | 3.20e-01 | 88.8% | 99.6% |
| 2nr7A00 | 1.20.141.10 | Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 | 0.51 | 46.0 | 3.89e-01 | 99.1% | 87.1% |
| 1v4eA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.50 | 35.0 | 2.72e-01 | 71.6% | 66.8% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3213897 | 5001.1.1.45 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Sra | 0.64 | 44.0 | 3.19e-01 | 70.7% | 38.7% |
| 3407094 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.62 | 52.0 | 4.74e-01 | 87.9% | 76.0% |
| 3455096 | 3722.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 | 0.62 | 51.0 | 4.00e-01 | 86.2% | 55.1% |
| 3587749 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.61 | 41.0 | 3.78e-01 | 75.0% | 51.6% |
| 3651890 | 604.1.1.3 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › MAP65_ASE1 | 0.60 | 50.0 | 4.27e-01 | 88.8% | 83.2% |
| 3640760 | 3291.1.1.17 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF202 | 0.60 | 39.0 | 4.08e-01 | 75.0% | 70.0% |
| 3812802 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.59 | 49.0 | 4.42e-01 | 88.8% | 67.7% |
| 3802509 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.58 | 41.0 | 3.81e-01 | 74.1% | 69.3% |
| 4957621 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.58 | 48.0 | 4.50e-01 | 89.7% | 74.5% |
| 4340733 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.57 | 46.0 | 3.55e-01 | 89.7% | 42.7% |
| 3746278 | 109.4.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 | 0.56 | 40.0 | 2.18e-01 | 73.3% | 11.4% |
| 3948495 | 102.2.1.11 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › PF27202 | 0.55 | 46.0 | 4.49e-01 | 88.8% | 80.8% |
| 3437911 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.54 | 34.0 | 3.33e-01 | 70.7% | 56.2% |
| 4561197 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.54 | 39.0 | 3.26e-01 | 75.0% | 52.7% |
| 3702535 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.53 | 42.0 | 3.27e-01 | 86.2% | 77.9% |
| 3516714 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.53 | 42.0 | 3.72e-01 | 84.5% | 92.9% |
| 3728909 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.53 | 34.0 | 3.51e-01 | 87.9% | 68.2% |
| 3206816 | 633.6.1.0 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like | 0.53 | 46.0 | 4.05e-01 | 95.7% | 68.0% |
| 3497236 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 43.0 | 3.26e-01 | 88.8% | 56.8% |
| 3950985 | 138.1.1.3 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNApol3-delta_C | 0.52 | 43.0 | 3.82e-01 | 88.8% | 80.6% |
| 3316949 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.51 | 40.0 | 3.82e-01 | 81.9% | 87.4% |
| 5073908 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.51 | 37.0 | 3.71e-01 | 75.9% | 80.0% |
| 3386316 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.50 | 36.0 | 3.68e-01 | 75.0% | 76.5% |
D2
medium
residues 166-288
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF27202.1 best | Flk_N | 73.4 | 2.00e-20 | 50.4% | 98.4% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.65 | 35.0 | 4.00e-01 | 86.2% | 70.0% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.53 | 34.0 | 3.91e-01 | 90.2% | 91.8% |
| 6k41R00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 41.0 | 3.36e-01 | 83.7% | 91.8% |
| 3hyuA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 40.0 | 3.86e-01 | 81.3% | 90.1% |
| 1f5qB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 38.0 | 3.95e-01 | 97.6% | 85.3% |
| 7uzqK01 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.52 | 45.0 | 3.31e-01 | 99.2% | 77.8% |
| 2w96A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 37.0 | 3.83e-01 | 95.1% | 82.3% |
| 1x9fD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 39.0 | 3.73e-01 | 81.3% | 92.9% |
| 1gzmA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 38.0 | 2.88e-01 | 81.3% | 79.9% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3948495 | 102.2.1.11 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › PF27202 | 0.97 | 94.0 | 9.38e-01 | 100.0% | 99.2% |
| 4946202 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 37.0 | 4.47e-01 | 73.2% | 96.2% |
| 3923713 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.60 | 53.0 | 4.54e-01 | 95.9% | 77.4% |
| 3809229 | 108.1.1.89 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › PMD | 0.57 | 38.0 | 3.90e-01 | 74.8% | 69.2% |
| 4397294 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.55 | 39.0 | 3.74e-01 | 73.2% | 81.4% |
| 3272839 | 3352.1.1.16 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › ALG3 | 0.55 | 48.0 | 3.56e-01 | 97.6% | 85.5% |
| 4940627 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.55 | 48.0 | 3.55e-01 | 100.0% | 90.6% |
| 3773789 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.54 | 37.0 | 3.47e-01 | 95.9% | 56.7% |
| 3588464 | 604.39.1.5 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF_trnsprt | 0.54 | 40.0 | 3.66e-01 | 78.0% | 94.1% |
| 3273891 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 39.0 | 4.00e-01 | 95.1% | 77.5% |
| 3618178 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.54 | 44.0 | 3.40e-01 | 89.4% | 78.2% |
| 4968245 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.53 | 47.0 | 4.03e-01 | 99.2% | 84.2% |
| 3188370 | 604.12.1.43 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Tim17 | 0.52 | 38.0 | 3.97e-01 | 76.4% | 93.0% |
| 4967612 | 3896.1.1.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase | 0.52 | 46.0 | 4.10e-01 | 100.0% | 85.9% |
| 3989924 | 162.1.1.2 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD_Mga | 0.52 | 43.0 | 4.46e-01 | 100.0% | 96.5% |
| 3923539 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.51 | 37.0 | 3.60e-01 | 97.6% | 66.2% |
| 3555840 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 40.0 | 3.05e-01 | 83.7% | 87.6% |
| 3652068 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.51 | 41.0 | 3.96e-01 | 97.6% | 78.3% |
| 3613860 | 601.1.2.105 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Transmemb_17 | 0.51 | 34.0 | 3.25e-01 | 84.6% | 59.3% |
| 3816829 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.50 | 36.0 | 3.39e-01 | 97.6% | 58.7% |