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NC_049344.1__YP_009965295.1__HYO69_gp17__00017
Bact-VirNC_049344.1__YP_009965295.1__HYO69_gp17__00017
Identity
- Accession:
- NC_049344 ↗
- Kingdom:
- phage
Quality
82.7
mean pLDDT
Taxonomy
TaxID: 2716354
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-88
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pvlA03 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.66 | 50.0 | 4.19e-01 | 82.1% | 51.7% |
| 1szqA02 | 3.30.1330.120 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 2-methylcitrate dehydratase PrpD | 0.62 | 45.0 | 3.59e-01 | 79.1% | 49.3% |
| 3f5cB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.62 | 43.0 | 3.28e-01 | 76.1% | 94.5% |
| 2i1yA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.60 | 51.0 | 3.40e-01 | 97.0% | 92.3% |
| 1irxA04 | 1.10.10.770 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.58 | 44.0 | 3.85e-01 | 85.1% | 54.6% |
| 3m1mA03 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.56 | 44.0 | 3.76e-01 | 85.1% | 54.5% |
| 3zheB02 | 1.20.190.60 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › | 0.56 | 47.0 | 3.41e-01 | 92.5% | 35.4% |
| 5ow2A00 | 1.10.10.930 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.55 | 35.0 | 3.39e-01 | 85.1% | 57.5% |
| 5m0nA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.54 | 44.0 | 2.79e-01 | 95.5% | 68.1% |
| 1lwdA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.54 | 42.0 | 2.57e-01 | 88.1% | 13.6% |
| 1i24A02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.54 | 41.0 | 3.28e-01 | 85.1% | 54.9% |
| 1rzuA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.53 | 36.0 | 2.65e-01 | 91.0% | 23.0% |
| 1w36C06 | 1.10.10.990 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 42.0 | 4.16e-01 | 92.5% | 87.5% |
| 2copA00 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.51 | 36.0 | 3.06e-01 | 73.1% | 70.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3708899 | 4207.1.1.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) | 0.63 | 37.0 | 3.12e-01 | 86.6% | 34.8% |
| 5022256 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 45.0 | 4.16e-01 | 85.1% | 65.6% |
| 3642655 | 3640.1.1.2 ↗ | alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › OPT | 0.56 | 48.0 | 4.37e-01 | 98.5% | 92.6% |
| 3202292 | 101.38.1.3 ↗ | alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › DUF6891 | 0.56 | 42.0 | 4.25e-01 | 86.6% | 88.6% |
| 4946473 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 38.0 | 3.48e-01 | 94.0% | 53.3% |
| 5077428 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 42.0 | 3.90e-01 | 86.6% | 66.7% |
| 3245162 | 604.1.1.127 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › EMC4 | 0.55 | 42.0 | 3.58e-01 | 86.6% | 69.2% |
| 4155141 | 1079.1.1.14 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › MarC | 0.55 | 44.0 | 3.31e-01 | 95.5% | 79.5% |
| 4463349 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 41.0 | 3.72e-01 | 86.6% | 61.0% |
| 3626320 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.53 | 45.0 | 3.86e-01 | 100.0% | 59.1% |
| 1790170 | 1050.1.1.0 ↗ | alpha arrays › BID domain of Bartonella effector protein (Bep) › BID domain of Bartonella effector protein (Bep) › BID domain of Bartonella effector protein (Bep) | 0.52 | 39.0 | 3.27e-01 | 86.6% | 56.2% |
| 3986130 | 2008.1.1.67 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C | 0.52 | 42.0 | 2.78e-01 | 92.5% | 20.3% |
| 5028595 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.51 | 38.0 | 2.93e-01 | 80.6% | 82.4% |