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NC_049345.1__YP_009874082.1__HYO70_gp84__00090

Bact-Vir

NC_049345.1__YP_009874082.1__HYO70_gp84__00090

Identity

Accession:
NC_049345 ↗
Kingdom:
phage

Quality

83.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Plymouthvirus› Roseovarius_Plymouth_podovirus_1

TaxID: 926474

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-61
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5x7fA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 35.0 2.46e-01 89.5% 17.7%
4ncbA05 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 39.0 2.99e-01 91.2% 29.9%
2fyiC01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 39.0 3.17e-01 93.0% 36.2%
4petA01 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.53 36.0 2.43e-01 70.2% 19.5%
7x2pA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 42.0 2.92e-01 100.0% 24.5%
6znpA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 35.0 2.48e-01 70.2% 21.7%
2i9iA00 3.30.160.180 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain 0.53 41.0 2.89e-01 91.2% 84.2%
2fukA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 40.0 2.82e-01 100.0% 23.9%
2ynmD02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.52 36.0 2.93e-01 75.4% 36.8%
7exbA01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.51 39.0 2.63e-01 91.2% 32.6%
3s3lA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 34.0 2.50e-01 71.9% 22.9%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3685668 7568.1.1.1 ↗ a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.61 41.0 3.50e-01 71.9% 44.0%
3724268 7568.1.1.0 ↗ a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.58 40.0 3.43e-01 89.5% 43.0%
4400644 7523.1.1.15 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.57 38.0 2.58e-01 89.5% 17.7%
3200840 2002.1.1.25 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.55 42.0 2.66e-01 89.5% 30.6%
3992735 7568.1.1.4 ↗ a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 0.54 37.0 3.07e-01 89.5% 37.4%
3263629 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.53 41.0 2.74e-01 93.0% 31.1%
10330 7503.1.1.5 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › NLBH 0.53 41.0 2.89e-01 91.2% 84.2%
4299926 2005.1.1.28 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › FAD_syn 0.52 45.0 3.33e-01 100.0% 47.7%