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NC_049357.1__YP_009874738.1__HYO84_gp41__00041

Bact-Vir

NC_049357.1__YP_009874738.1__HYO84_gp41__00041

Identity

Accession:
NC_049357 ↗
Kingdom:
phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Skunavirus› Lactococcus_phage_936_group_phage_Phi5.12

TaxID: 1636570

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-95
PDB
Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07463.17 best NUMOD4 47.3 2.60e-12 48.3% 91.8%
D2 high residues 106-157
PDB
Domain cluster: rep: IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_10000072181__D164-213
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF22083.3 best I-HmuI_NUMOD-like 32.8 5.90e-08 90.4% 76.1%
PF07453.20 NUMOD1 32.0 1.60e-07 69.2% 97.3%
D3 high residues 208-269
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 38.0 3.79e-01 90.3% 51.5%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 39.0 3.18e-01 90.3% 35.3%
6pwkA02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.58 46.0 3.16e-01 88.7% 53.7%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.57 50.0 3.89e-01 100.0% 95.7%
5mghA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 40.0 2.63e-01 80.6% 71.3%
4mz0B05 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.53 47.0 4.62e-01 100.0% 91.0%
3licA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 38.0 2.85e-01 80.6% 58.4%
3m4rA01 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.52 40.0 2.92e-01 87.1% 80.6%
1wktA00 2.60.20.20 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › 0.52 33.0 3.00e-01 100.0% 44.3%
3qpbF00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.52 42.0 2.87e-01 91.9% 49.8%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 3.02e-01 90.3% 42.6%
6j7cA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 40.0 3.06e-01 90.3% 95.2%
4ioyX02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 37.0 3.13e-01 100.0% 44.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3312666 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 45.0 4.35e-01 100.0% 68.6%
3900957 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 40.0 3.14e-01 90.3% 32.3%
3801400 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 39.0 2.52e-01 90.3% 14.5%
3998029 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 34.0 2.92e-01 88.7% 35.2%
3876901 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 46.0 3.35e-01 100.0% 64.2%
4029840 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.54 43.0 2.56e-01 90.3% 40.8%
4995535 219.1.1.76 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.53 42.0 3.03e-01 87.1% 77.8%
3510894 844.1.1.1 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Tub 0.53 47.0 3.15e-01 100.0% 87.8%
2051 72.1.1.6 ↗ beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like › Yeast-kill-tox 0.52 33.0 3.00e-01 100.0% 44.3%
3974731 601.52.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › Flagellar hook-associated protein 1 helical domain › Flagellar hook-associated protein 1 helical domain › FlgK_D1 0.52 39.0 2.50e-01 83.9% 70.0%
4109482 223.1.1.182 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › DUF3369 0.52 36.0 2.71e-01 83.9% 27.6%
3886674 868.1.1.5 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 0.51 44.0 3.11e-01 100.0% 88.5%
3627778 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.50 37.0 3.19e-01 79.0% 71.0%
5012995 219.1.1.76 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.50 39.0 2.81e-01 88.7% 85.4%
3353945 1.1.7.101 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ubiquitin_UBP8 0.50 43.0 3.16e-01 100.0% 70.0%