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NC_049362.1__YP_009874994.1__HYO89_gp19__00019
Bact-VirNC_049362.1__YP_009874994.1__HYO89_gp19__00019
Identity
- Accession:
- NC_049362 ↗
- Kingdom:
- phage
Quality
97.2
mean pLDDT
Taxonomy
TaxID: 1636566
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-89
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gmlA02 | 3.30.70.1560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif | 0.62 | 48.0 | 5.12e-01 | 100.0% | 97.3% |
| 1yelA00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.62 | 49.0 | 4.70e-01 | 86.4% | 77.5% |
| 2jhnA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.60 | 45.0 | 4.18e-01 | 79.5% | 99.1% |
| 3k0xA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 39.0 | 3.77e-01 | 85.2% | 66.7% |
| 4hkjD00 | 2.60.240.30 | Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › | 0.54 | 47.0 | 3.74e-01 | 100.0% | 79.6% |
| 3oz2A02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.53 | 44.0 | 3.65e-01 | 100.0% | 50.6% |
| 4oq1A01 | 2.60.40.4180 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 44.0 | 3.99e-01 | 94.3% | 95.0% |
| 1cdwA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.52 | 46.0 | 4.68e-01 | 97.7% | 100.0% |
| 3u97A00 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.51 | 37.0 | 3.89e-01 | 75.0% | 97.4% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3946833 | 1.1.16.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › Phage_GPO | 0.78 | 71.0 | 6.08e-01 | 98.9% | 100.0% |
| 3824022 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.64 | 51.0 | 4.91e-01 | 86.4% | 83.0% |
| 209 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.62 | 49.0 | 4.70e-01 | 86.4% | 77.5% |
| 3806930 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.59 | 47.0 | 4.53e-01 | 86.4% | 85.0% |
| 3827010 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.59 | 47.0 | 4.58e-01 | 85.2% | 85.3% |
| 3379294 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.59 | 46.0 | 3.68e-01 | 85.2% | 42.8% |
| 3344608 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.58 | 45.0 | 4.38e-01 | 86.4% | 79.0% |
| 4308012 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.57 | 48.0 | 5.00e-01 | 96.6% | 100.0% |
| 3467088 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.57 | 45.0 | 4.22e-01 | 86.4% | 81.5% |
| 3452758 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.57 | 44.0 | 4.38e-01 | 85.2% | 82.1% |
| 5059828 | 11.1.1.171 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_5 | 0.55 | 42.0 | 4.33e-01 | 85.2% | 95.3% |
| 4367883 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.54 | 45.0 | 4.47e-01 | 100.0% | 89.5% |
| 3738444 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.54 | 48.0 | 4.24e-01 | 100.0% | 69.2% |
| 5040690 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 41.0 | 4.02e-01 | 97.7% | 80.0% |