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NC_049371.1__YP_009875480.1__HYO98_gp02__00002

Bact-Vir

NC_049371.1__YP_009875480.1__HYO98_gp02__00002

Identity

Accession:
NC_049371 ↗
Kingdom:
phage

Quality

76.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Sanyabayvirus› Dinoroseobacter_phage_DS-1410Ws-06

TaxID: 1815983

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-121
PDB
Domain cluster: rep: MH015256.1__AWY09434.1__vBRpoPV13_77__00077__D34-121
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.65 52.0 4.51e-01 86.0% 92.2%
2h2yA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.61 43.0 4.05e-01 74.2% 96.6%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 41.0 3.42e-01 72.0% 47.6%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 48.0 4.02e-01 88.2% 69.7%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 42.0 4.16e-01 96.8% 70.1%
3vwaA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 37.0 3.84e-01 100.0% 70.0%
6ka3A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 43.0 3.83e-01 89.2% 84.4%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 45.0 3.73e-01 95.7% 79.7%
1fuwA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.90e-01 100.0% 81.3%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.52 35.0 3.27e-01 71.0% 62.6%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 3.82e-01 72.0% 93.4%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 35.0 3.89e-01 100.0% 94.4%
4be3A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 3.02e-01 95.7% 59.3%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3593021 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 45.0 3.96e-01 100.0% 48.9%
3177323 11.1.1.378 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Rgp1 0.64 44.0 3.48e-01 71.0% 70.5%
4827588 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.61 48.0 3.94e-01 83.9% 79.6%
3709589 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.60 49.0 4.06e-01 92.5% 86.9%
2673496 11.1.1.192 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set_2 0.59 41.0 4.11e-01 98.9% 69.7%
5054163 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 42.0 3.99e-01 75.3% 90.0%
1122053 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.58 49.0 3.56e-01 91.4% 87.8%
3225193 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.57 44.0 3.95e-01 86.0% 87.1%
3243158 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.57 44.0 3.98e-01 86.0% 89.6%
3820662 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.57 43.0 3.70e-01 83.9% 97.5%
3302171 11.10.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › Sina_TRAF 0.56 49.0 4.39e-01 100.0% 96.3%
3999888 4018.1.1.0 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases 0.55 42.0 3.84e-01 83.9% 93.8%
3288084 331.3.1.62 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF30732 0.54 46.0 3.63e-01 94.6% 61.5%
3240153 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.53 40.0 3.72e-01 82.8% 95.2%
3281093 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 43.0 3.73e-01 89.2% 96.0%
3284732 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 45.0 3.54e-01 94.6% 69.0%
3257790 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.53 44.0 3.97e-01 89.2% 97.6%
3272801 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.52 44.0 3.02e-01 96.8% 32.3%
3867754 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 37.0 3.61e-01 75.3% 90.5%
5045854 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.52 33.0 3.56e-01 97.8% 76.2%
4927674 814.1.1.0 ↗ a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase 0.51 42.0 3.75e-01 95.7% 100.0%