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NC_049371.1__YP_009875501.1__HYO98_gp23__00023
Bact-VirNC_049371.1__YP_009875501.1__HYO98_gp23__00023
Identity
- Accession:
- NC_049371 ↗
- Kingdom:
- phage
Quality
88.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Schitoviridae›
Sanyabayvirus›
Dinoroseobacter_phage_DS-1410Ws-06
TaxID: 1815983
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-175
Domain cluster:
rep: IMGVR_UViG_3300011969_000001-3300011969-Ga0120166_100003832__D4-174
D2
high
residues 208-311_369-426
Domain cluster:
rep: IMGVR_UViG_3300025156_000428-3300025156-Ga0209834_1000016635__D1-193
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02511.21 best | Thy1 | 88.6 | 6.20e-25 | 58.6% | 52.9% |
| PF02511.21 | Thy1 | 37.8 | 2.40e-09 | 30.9% | 24.6% |
D3
medium
residues 312-368
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02511.21 best | Thy1 | 27.1 | 4.50e-06 | 98.2% | 19.4% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fzbA02 | 1.20.5.3070 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.92 | 62.0 | 7.32e-01 | 70.2% | 100.0% |
| 1kq4A00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.89 | 70.0 | 4.59e-01 | 100.0% | 23.2% |
| 4p5aC00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.85 | 76.0 | 5.01e-01 | 100.0% | 25.6% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4628182 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.94 | 88.0 | 5.53e-01 | 100.0% | 23.9% |
| 3495243 | 316.1.1.30 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PAP_NTPase | 0.93 | 64.0 | 4.27e-01 | 71.9% | 21.6% |
| 5066566 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.91 | 63.0 | 4.04e-01 | 71.9% | 18.6% |
| 5077404 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.91 | 64.0 | 4.04e-01 | 77.2% | 17.1% |
| 4933143 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.91 | 64.0 | 4.19e-01 | 77.2% | 20.7% |
| 4930760 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.91 | 66.0 | 4.09e-01 | 100.0% | 16.5% |
| 4133204 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.90 | 64.0 | 4.02e-01 | 77.2% | 17.5% |
| 4992830 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.89 | 68.0 | 4.33e-01 | 82.5% | 20.0% |
| 4943595 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.89 | 62.0 | 3.94e-01 | 100.0% | 18.2% |
| 4933142 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.85 | 59.0 | 3.80e-01 | 77.2% | 17.8% |
| 1716752 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.85 | 77.0 | 5.03e-01 | 100.0% | 25.2% |
| 5024487 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.85 | 59.0 | 3.84e-01 | 77.2% | 19.5% |
| 4888098 | 10.13.1.1 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase | 0.84 | 61.0 | 4.81e-01 | 77.2% | 40.5% |
| 4060791 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.82 | 73.0 | 4.53e-01 | 100.0% | 20.8% |
| 4102574 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.79 | 73.0 | 4.68e-01 | 100.0% | 24.6% |
| 3247154 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.77 | 66.0 | 4.59e-01 | 91.2% | 72.7% |
| 3895470 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.77 | 52.0 | 4.44e-01 | 71.9% | 46.3% |
| 4779949 | 210.1.4.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase › Asparaginase_2 | 0.76 | 56.0 | 3.95e-01 | 77.2% | 30.6% |
| 3742534 | 622.4.1.52 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › TMEM254 | 0.75 | 68.0 | 5.57e-01 | 100.0% | 64.0% |
| 4976946 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.73 | 55.0 | 3.59e-01 | 100.0% | 19.2% |
| 3530430 | 283.1.1.5 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › DAAF9 | 0.61 | 55.0 | 3.38e-01 | 100.0% | 19.4% |
| 5038092 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.59 | 49.0 | 4.39e-01 | 96.5% | 68.2% |
| 4955043 | 842.1.1.1 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1 | 0.57 | 50.0 | 3.62e-01 | 96.5% | 48.0% |
| 3897379 | 568.1.1.0 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related | 0.54 | 49.0 | 3.50e-01 | 100.0% | 49.7% |
D4
medium
residues 432-468
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3b0cW00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.88 | 59.0 | 4.62e-01 | 70.3% | 61.6% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.77 | 62.0 | 5.21e-01 | 89.2% | 55.7% |
| 3kegA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.76 | 54.0 | 3.38e-01 | 75.7% | 16.1% |
| 3pdiA02 | 3.40.50.12380 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase MoFe cofactor biosynthesis protein NifE, C-terminal | 0.74 | 65.0 | 3.86e-01 | 100.0% | 43.2% |
| 3g27A01 | 3.30.50.20 | Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › prophage-derive protein ybcO | 0.74 | 62.0 | 5.22e-01 | 100.0% | 95.5% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.73 | 62.0 | 4.92e-01 | 100.0% | 94.9% |
| 4impA01 | 6.10.140.1830 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 51.0 | 4.65e-01 | 78.4% | 64.2% |
| 4gf0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.72 | 49.0 | 3.51e-01 | 86.5% | 23.9% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.71 | 56.0 | 4.02e-01 | 91.9% | 29.1% |
| 4xrpA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 60.0 | 3.98e-01 | 97.3% | 25.2% |
| 4ywoA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.70 | 53.0 | 3.31e-01 | 83.8% | 18.9% |
| 2yqzA02 | 1.10.8.900 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.68 | 58.0 | 4.74e-01 | 97.3% | 77.9% |
| 2dr1A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.65 | 52.0 | 3.13e-01 | 89.2% | 63.4% |
| 2r18A02 | 1.10.8.880 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 | 0.64 | 47.0 | 4.05e-01 | 81.1% | 54.2% |
| 5w79A01 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.62 | 48.0 | 3.91e-01 | 83.8% | 51.4% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4996616 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.81 | 65.0 | 5.45e-01 | 86.5% | 54.2% |
| 5021823 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 58.0 | 4.04e-01 | 94.6% | 53.8% |
| 3323394 | 397.4.1.2 ↗ | few secondary structure elements › Toxic hairpin › VhTI-like › VhTI-like › DUF842 | 0.66 | 46.0 | 4.68e-01 | 73.0% | 80.0% |