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NC_049380.1__YP_009876332.1__HYP07_gp107__00107

Bact-Vir

NC_049380.1__YP_009876332.1__HYP07_gp107__00107

Identity

Accession:
NC_049380 ↗
Kingdom:
phage

Quality

93.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Pacinivirus› Vibrio_phage_JSF3

TaxID: 1916111

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-88
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23772.2 best Phage_g100 55.5 1.50e-14 100.0% 93.3%
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.68 52.0 5.28e-01 95.0% 84.4%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.69e-01 90.0% 80.5%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 48.0 5.05e-01 88.7% 91.7%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.62 52.0 4.41e-01 93.8% 73.7%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 47.0 3.53e-01 95.0% 32.5%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 47.0 4.35e-01 95.0% 64.4%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.20e-01 87.5% 78.1%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 41.0 3.60e-01 76.2% 87.4%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 35.0 4.25e-01 77.5% 98.0%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.92e-01 87.5% 63.5%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.56e-01 88.7% 92.9%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 35.0 4.14e-01 77.5% 96.2%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 41.0 3.38e-01 90.0% 42.7%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 44.0 4.33e-01 91.3% 77.9%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 37.0 4.09e-01 80.0% 89.8%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.57e-01 90.0% 91.7%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 36.0 4.06e-01 71.2% 91.1%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 34.0 4.01e-01 76.2% 94.2%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 35.0 3.66e-01 91.3% 67.6%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 40.0 3.36e-01 76.2% 89.1%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.80e-01 90.0% 62.7%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 36.0 3.89e-01 77.5% 82.8%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.82e-01 85.0% 74.1%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 39.0 3.35e-01 76.2% 88.9%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.54 43.0 3.98e-01 88.7% 79.8%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.54 39.0 4.11e-01 77.5% 88.6%
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 33.0 3.26e-01 87.5% 57.3%
6b9tF02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 39.0 3.51e-01 90.0% 57.8%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 37.0 3.27e-01 76.2% 92.7%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 35.0 2.97e-01 90.0% 40.9%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 38.0 2.86e-01 77.5% 86.7%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 37.0 3.22e-01 76.2% 89.1%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 37.0 3.20e-01 90.0% 47.6%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 36.0 3.90e-01 83.7% 90.6%
1ywhA01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 38.0 3.85e-01 93.8% 77.8%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 39.0 3.23e-01 90.0% 46.4%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 37.0 3.44e-01 92.5% 59.4%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 37.0 2.79e-01 77.5% 66.8%
2ovsA00 2.40.128.380 Mainly Beta › Beta Barrel › Lipocalin › T3SS negative regulator GrlR 0.51 41.0 3.68e-01 91.3% 91.5%
4csqA00 2.30.29.190 Mainly Beta › Roll › PH-domain like › 0.51 42.0 3.84e-01 93.8% 91.2%
2r0xA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 38.0 3.16e-01 83.7% 85.3%
2jqjA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.50 40.0 3.45e-01 87.5% 86.2%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 45.0 5.01e-01 90.0% 85.9%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.66 48.0 5.24e-01 88.7% 95.4%
3260945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 45.0 4.98e-01 83.7% 93.3%
3066474 1.1.17.2 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 0.63 46.0 3.38e-01 76.2% 42.3%
3502085 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 55.0 5.10e-01 95.0% 76.0%
4338510 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.61 47.0 3.48e-01 95.0% 31.2%
3412900 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 48.0 4.27e-01 86.3% 80.0%
5073368 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.97e-01 95.0% 97.1%
3646145 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 44.0 2.82e-01 77.5% 25.4%
3591459 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.59 40.0 3.99e-01 77.5% 67.1%
3563220 4.1.1.220 ↗ beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.59 43.0 4.32e-01 91.3% 77.5%
3702154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 43.0 4.47e-01 95.0% 88.0%
3435006 4.1.1.308 ↗ beta barrels › SH3 › SH3 › SH3 › PF31073 0.56 42.0 4.54e-01 90.0% 98.5%
3937216 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.56 45.0 3.91e-01 90.0% 63.1%
4947401 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 40.0 3.23e-01 76.2% 87.1%
5026072 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 35.0 3.68e-01 95.0% 72.9%
3414887 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.55 43.0 3.05e-01 88.7% 32.4%
3613178 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.54 43.0 3.72e-01 90.0% 65.2%
1833801 220.1.1.25 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 0.54 41.0 3.82e-01 85.0% 74.1%
5049640 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 42.0 4.25e-01 86.3% 86.1%
3678767 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 36.0 3.23e-01 95.0% 48.7%
5013328 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.53 35.0 3.87e-01 82.5% 90.0%
3627921 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 38.0 3.11e-01 78.8% 50.6%
5041236 375.13.1.1 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt 0.52 33.0 3.88e-01 82.5% 94.5%
3591998 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.52 41.0 3.76e-01 88.7% 79.1%
3685445 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 42.0 3.74e-01 90.0% 75.8%
58 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.52 37.0 3.20e-01 90.0% 47.6%
1695162 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.52 37.0 2.76e-01 76.2% 64.0%
3515097 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 36.0 3.30e-01 98.8% 55.2%
3634892 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.51 41.0 3.45e-01 93.8% 74.2%
3482713 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 3.39e-01 86.3% 70.4%
4033197 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 33.0 3.36e-01 95.0% 67.5%
4144048 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.50 33.0 3.42e-01 95.0% 72.0%