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NC_049388.1__YP_009877297.1__HYP15_gp42__00042

Bact-Vir

NC_049388.1__YP_009877297.1__HYP15_gp42__00042

Identity

Accession:
NC_049388 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Peduovirus› Peduovirus_P24C9

TaxID: 2844221

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-119
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jykA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 27.0 3.60e-01 98.1% 63.8%
4uavA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 52.0 5.66e-01 85.4% 100.0%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 40.0 4.63e-01 85.4% 100.0%
3bciA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 47.0 4.10e-01 90.3% 57.0%
3o6xA02 1.20.120.1560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.56 43.0 3.81e-01 80.6% 93.9%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.56 35.0 3.53e-01 87.4% 62.7%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.55 34.0 3.46e-01 86.4% 61.9%
1yhlA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.55 41.0 2.84e-01 78.6% 59.1%
3cucA00 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.55 47.0 3.54e-01 96.1% 94.3%
2n3eA01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.54 41.0 4.01e-01 81.6% 80.0%
3lomA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.54 43.0 3.11e-01 85.4% 46.2%
4dhdA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 38.0 2.73e-01 75.7% 59.5%
7craA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 38.0 3.99e-01 83.5% 85.9%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.51 31.0 3.57e-01 75.7% 83.1%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.51 32.0 3.34e-01 85.4% 67.0%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038439 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.66 49.0 5.12e-01 86.4% 85.3%
4568104 4030.1.1.23 ↗ alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › Dpy19 0.61 29.0 3.69e-01 73.8% 76.7%
4949723 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.60 38.0 4.40e-01 74.8% 94.3%
3174667 102.5.1.0 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.59 35.0 4.28e-01 73.8% 100.0%
4964212 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.59 38.0 4.31e-01 79.6% 94.3%
4940954 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.59 32.0 2.30e-01 82.5% 19.3%
4927478 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.58 36.0 4.12e-01 73.8% 88.6%
3701318 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.58 34.0 4.10e-01 74.8% 98.3%
3696555 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.55 41.0 3.36e-01 77.7% 86.5%
4867516 5054.1.1.58 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › YVC1_C 0.55 43.0 4.02e-01 86.4% 71.9%
4342809 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 40.0 3.73e-01 87.4% 62.4%
4145738 160.1.1.4 ↗ alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_VA_C 0.54 36.0 3.27e-01 95.1% 49.7%
4965217 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.53 35.0 4.05e-01 80.6% 100.0%
3731805 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 42.0 3.88e-01 84.5% 67.7%
3282948 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.52 44.0 3.81e-01 94.2% 77.5%
4027212 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.51 36.0 3.26e-01 87.4% 53.6%
3853375 633.23.1.22 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.50 40.0 3.26e-01 87.4% 85.4%
D2 high residues 142-335
PDB
Domain cluster: rep: IMGVR_UViG_3300029881_000391-3300029881-Ga0245307_1000082149__D2-177
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02481.22 best DNA_processg_A 168.6 1.50e-49 96.9% 82.9%